Wall clock time and date at job start Mon Mar 30 2020 02:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.27543 * 2 1 4 4 C 1.53994 * 110.30905 * 122.09053 * 2 1 3 5 5 N 1.47903 * 107.05830 * 117.78508 * 4 2 1 6 6 C 1.46897 * 110.99723 * 145.84453 * 5 4 2 7 7 C 1.48532 * 105.81651 * 25.33452 * 5 4 2 8 8 C 1.54592 * 110.30731 * 237.91124 * 2 1 3 9 9 H 1.09001 * 110.72451 * 337.38875 * 8 2 1 10 10 N 1.46500 * 110.72440 * 100.67080 * 8 2 1 11 11 C 1.36935 * 119.99852 * 205.00081 * 10 8 2 12 12 H 1.08000 * 120.00584 * 359.97438 * 11 10 8 13 13 C 1.38811 * 119.99900 * 180.02562 * 11 10 8 14 14 N 1.31613 * 119.99996 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 120.00031 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46911 * 89.99632 * 15 13 11 17 17 H 1.48496 * 109.47038 * 209.99527 * 15 13 11 18 18 H 1.48493 * 109.47095 * 329.99657 * 15 13 11 19 19 H 1.09002 * 109.47030 * 300.70337 * 1 2 3 20 20 H 1.09000 * 109.47306 * 60.69727 * 1 2 3 21 21 H 1.08997 * 109.47367 * 180.70017 * 1 2 3 22 22 H 1.08995 * 109.91874 * 237.14152 * 4 2 1 23 23 H 1.09002 * 109.91369 * 358.43586 * 4 2 1 24 24 H 1.09006 * 109.47366 * 60.00373 * 6 5 4 25 25 H 1.09005 * 109.47389 * 180.02562 * 6 5 4 26 26 H 1.09002 * 109.47614 * 300.00031 * 6 5 4 27 27 H 1.08996 * 110.67351 * 79.22817 * 7 5 4 28 28 H 1.09003 * 110.66251 * 202.18986 * 7 5 4 29 29 H 0.96994 * 120.00131 * 25.00277 * 10 8 2 30 30 H 0.97003 * 120.00176 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0645 -0.7673 1.2236 5 7 2.8332 -1.9217 0.7099 6 6 3.9767 -2.2225 1.5816 7 6 3.2881 -1.5326 -0.6495 8 6 2.0665 -0.7702 -1.2283 9 1 1.3178 -1.4680 -1.6033 10 7 2.4844 0.1591 -2.2810 11 6 2.5006 -0.2493 -3.5879 12 1 2.2057 -1.2565 -3.8427 13 6 2.8970 0.6311 -4.5852 14 7 3.2569 1.8584 -4.2748 15 14 2.9198 0.0738 -6.3681 16 1 1.6007 0.3526 -6.9907 17 1 3.9796 0.8097 -7.1032 18 1 3.1971 -1.3838 -6.4276 19 1 -0.3633 0.5247 0.8836 20 1 -0.3634 0.5030 -0.8962 21 1 -0.3634 -1.0275 0.0126 22 1 2.7148 -0.1205 1.8124 23 1 1.2326 -1.1174 1.8346 24 1 3.6176 -2.4595 2.5832 25 1 4.5249 -3.0750 1.1806 26 1 4.6364 -1.3560 1.6277 27 1 4.1580 -0.8785 -0.5916 28 1 3.5117 -2.4159 -1.2478 29 1 2.7496 1.0636 -2.0522 30 1 3.5335 2.4737 -4.9717 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722255093.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:42 Heat of formation + Delta-G solvation = -10.208816 kcal Electronic energy + Delta-G solvation = -11525.074511 eV Core-core repulsion = 9547.394136 eV Total energy + Delta-G solvation = -1977.680375 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.11110 -36.12784 -34.11918 -32.44646 -29.34410 -27.65117 -26.15579 -24.19678 -21.87448 -21.09230 -19.11604 -17.21561 -16.48449 -16.10146 -15.36762 -14.93838 -14.78473 -14.54216 -13.94407 -13.63287 -13.24848 -12.94454 -12.84059 -12.41646 -12.32234 -12.23407 -11.98373 -11.79037 -11.64170 -11.37482 -10.91351 -9.39456 -9.03012 -7.95987 -5.25260 1.47068 1.48602 1.57176 2.54541 3.12580 3.36240 3.73088 3.96706 3.99696 4.22505 4.40245 4.53066 4.55745 4.64700 4.67693 4.72491 4.96566 4.99559 5.10047 5.16137 5.20285 5.32275 5.46559 5.50457 5.92206 6.14617 6.27059 7.31784 8.06176 8.30201 9.27397 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.054591 B = 0.010609 C = 0.009721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.784420 B = 2638.512923 C = 2879.696575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.111 4.111 3 H 0.060 0.940 4 C 0.048 3.952 5 N -0.529 5.529 6 C 0.016 3.984 7 C 0.023 3.977 8 C 0.174 3.826 9 H 0.056 0.944 10 N -0.729 5.729 11 C -0.242 4.242 12 H 0.075 0.925 13 C -0.075 4.075 14 N -0.970 5.970 15 Si 0.973 3.027 16 H -0.286 1.286 17 H -0.296 1.296 18 H -0.269 1.269 19 H 0.073 0.927 20 H 0.038 0.962 21 H 0.062 0.938 22 H 0.047 0.953 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.372 0.628 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -5.935 10.841 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.131 4.131 3 H 0.078 0.922 4 C -0.080 4.080 5 N -0.253 5.253 6 C -0.132 4.132 7 C -0.108 4.108 8 C 0.064 3.936 9 H 0.074 0.926 10 N -0.368 5.368 11 C -0.374 4.374 12 H 0.093 0.907 13 C -0.267 4.267 14 N -0.620 5.620 15 Si 0.802 3.198 16 H -0.213 1.213 17 H -0.222 1.222 18 H -0.194 1.194 19 H 0.092 0.908 20 H 0.057 0.943 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.044 0.956 28 H 0.083 0.917 29 H 0.204 0.796 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.626 -6.528 10.683 12.792 hybrid contribution 0.968 1.084 -1.062 1.800 sum -1.658 -5.444 9.621 11.178 Atomic orbital electron populations 1.21681 0.93132 1.02103 1.01539 1.22241 0.97662 0.98631 0.94535 0.92166 1.22933 0.98297 0.90804 0.95962 1.64707 1.21814 1.36446 1.02328 1.22573 0.92234 1.00392 0.98033 1.23839 0.98140 0.98560 0.90298 1.21380 0.93396 0.91028 0.87757 0.92570 1.42561 1.79406 1.12213 1.02622 1.19643 1.36034 0.96979 0.84697 0.90671 1.25563 1.02778 0.96192 1.02164 1.69817 1.53028 1.06190 1.33011 0.85145 0.76924 0.77669 0.80074 1.21332 1.22216 1.19420 0.90796 0.94288 0.91895 0.93486 0.88491 0.89476 0.91162 0.95976 0.95619 0.91699 0.79564 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.72 8.88 71.98 0.64 -3.08 16 2 C -0.11 -3.74 3.32 -9.92 -0.03 -3.78 16 3 H 0.06 2.19 7.75 -2.39 -0.02 2.18 16 4 C 0.05 1.36 6.36 86.45 0.55 1.91 16 5 N -0.53 -16.38 5.55 -908.61 -5.05 -21.43 16 6 C 0.02 0.40 9.40 127.69 1.20 1.60 16 7 C 0.02 0.86 6.25 86.74 0.54 1.40 16 8 C 0.17 7.23 3.28 46.29 0.15 7.38 16 9 H 0.06 2.42 7.82 -2.39 -0.02 2.40 16 10 N -0.73 -37.67 5.23 -316.83 -1.66 -39.33 16 11 C -0.24 -13.63 9.96 84.03 0.84 -12.79 16 12 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 13 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 14 N -0.97 -59.88 13.06 21.65 0.28 -59.60 16 15 Si 0.97 46.56 29.55 68.60 2.03 48.58 16 16 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 17 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 21 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 22 H 0.05 1.24 7.73 -2.39 -0.02 1.23 16 23 H 0.10 2.32 7.68 -2.39 -0.02 2.30 16 24 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.02 0.56 8.00 -2.39 -0.02 0.54 16 27 H 0.03 1.05 7.96 -2.39 -0.02 1.04 16 28 H 0.06 2.53 8.14 -2.39 -0.02 2.52 16 29 H 0.37 20.64 7.58 -92.71 -0.70 19.93 16 30 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -62.59 247.19 0.36 -62.24 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.40 Total: 20.77 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: 4.35 Total: -11.23 kcal Atomic # 7 Polarization: -113.93 SS G_CDS: -6.42 Total: -120.35 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.58 kcal Total: -62.59 0.36 -62.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722255093.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.027 kcal (2) G-P(sol) polarization free energy of solvation -62.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds