Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.36837 * 2 1 4 4 C 1.54377 * 110.51011 * 237.58573 * 2 1 3 5 5 C 1.54259 * 105.06042 * 217.31765 * 4 2 1 6 6 H 1.09003 * 110.41009 * 118.94098 * 5 4 2 7 7 N 1.46898 * 110.32549 * 241.10292 * 5 4 2 8 8 C 1.46904 * 111.00202 * 202.09084 * 7 5 4 9 9 C 1.50697 * 109.46891 * 180.02562 * 8 7 5 10 10 H 1.07991 * 120.00449 * 359.72239 * 9 8 7 11 11 C 1.37885 * 119.99686 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.72095 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.72528 * 11 9 8 14 14 H 1.48493 * 109.47326 * 90.00142 * 13 11 9 15 15 H 1.48506 * 109.46545 * 209.99892 * 13 11 9 16 16 H 1.48498 * 109.47210 * 329.99603 * 13 11 9 17 17 C 1.54376 * 105.06118 * 0.02562 * 5 4 2 18 18 N 1.48557 * 104.59447 * 23.84909 * 17 5 4 19 19 H 1.09005 * 109.47278 * 299.10024 * 1 2 3 20 20 H 1.08997 * 109.47101 * 59.10029 * 1 2 3 21 21 H 1.09005 * 109.47190 * 179.09901 * 1 2 3 22 22 H 1.08995 * 110.32426 * 98.42262 * 4 2 1 23 23 H 1.09002 * 110.32636 * 336.21292 * 4 2 1 24 24 H 1.00899 * 111.00328 * 326.04737 * 7 5 4 25 25 H 1.08998 * 109.47046 * 59.99771 * 8 7 5 26 26 H 1.09001 * 109.47014 * 299.99971 * 8 7 5 27 27 H 0.97000 * 119.99651 * 180.02562 * 12 11 9 28 28 H 1.09002 * 110.41510 * 142.63079 * 17 5 4 29 29 H 1.09001 * 110.40919 * 265.07219 * 17 5 4 30 30 H 1.00904 * 110.99950 * 80.07918 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7751 -1.2206 5 6 3.3209 -1.5162 -0.7031 6 1 3.1929 -2.5939 -0.8041 7 7 4.5155 -1.0743 -1.4349 8 6 5.5829 -2.0807 -1.3570 9 6 6.7894 -1.5931 -2.1169 10 1 6.7642 -0.6339 -2.6124 11 6 7.9234 -2.3745 -2.1849 12 7 7.9540 -3.5429 -1.5820 13 14 9.4162 -1.7735 -3.1334 14 1 10.3027 -1.0030 -2.2248 15 1 10.1584 -2.9387 -3.6783 16 1 8.9744 -0.9014 -4.2511 17 6 3.4297 -1.1270 0.7869 18 7 2.0477 -0.7459 1.1761 19 1 -0.3634 0.4998 0.8980 20 1 -0.3633 0.5277 -0.8818 21 1 -0.3634 -1.0276 -0.0162 22 1 2.3438 -0.0835 -2.0176 23 1 1.3275 -1.4889 -1.5757 24 1 4.2922 -0.8578 -2.3947 25 1 5.2324 -3.0165 -1.7924 26 1 5.8527 -2.2441 -0.3136 27 1 8.7519 -4.0925 -1.6295 28 1 3.7704 -1.9772 1.3779 29 1 4.1064 -0.2815 0.9105 30 1 1.4860 -1.5632 1.3623 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885247024.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = -30.675790 kcal Electronic energy + Delta-G solvation = -11217.414456 eV Core-core repulsion = 9238.846567 eV Total energy + Delta-G solvation = -1978.567890 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.04649 -36.39402 -34.38145 -31.79124 -30.39273 -27.66431 -26.03802 -23.86395 -22.07985 -21.04081 -18.56301 -17.11247 -16.50583 -16.32593 -16.09205 -15.09140 -15.07135 -14.48811 -13.98547 -13.56584 -13.16503 -12.94529 -12.71538 -12.57035 -12.41341 -12.13230 -12.08138 -11.70364 -11.62664 -11.23138 -10.69057 -9.79034 -9.11632 -8.25226 -6.36956 1.40156 1.42416 1.53499 2.38425 3.08167 3.22043 3.55519 3.72943 3.95598 4.11793 4.40833 4.45913 4.56728 4.62815 4.86096 4.93868 4.98158 5.05425 5.18613 5.22654 5.25283 5.32696 5.58085 5.73521 6.00497 6.40546 6.46473 6.69532 6.85587 7.34353 8.86580 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.096168 B = 0.007771 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 291.085836 B = 3602.188960 C = 3721.750835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.081 0.919 4 C -0.144 4.144 5 C 0.046 3.954 6 H 0.023 0.977 7 N -0.677 5.677 8 C 0.210 3.790 9 C -0.538 4.538 10 H 0.065 0.935 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.976 3.024 14 H -0.273 1.273 15 H -0.281 1.281 16 H -0.262 1.262 17 C 0.057 3.943 18 N -0.663 5.663 19 H 0.067 0.933 20 H 0.075 0.925 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.335 0.665 25 H -0.043 1.043 26 H 0.000 1.000 27 H 0.266 0.734 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.532 5.136 1.049 13.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.041 4.041 3 H 0.099 0.901 4 C -0.183 4.183 5 C -0.066 4.066 6 H 0.041 0.959 7 N -0.308 5.308 8 C 0.082 3.918 9 C -0.576 4.576 10 H 0.083 0.917 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.800 3.200 14 H -0.198 1.198 15 H -0.206 1.206 16 H -0.187 1.187 17 C -0.074 4.074 18 N -0.291 5.291 19 H 0.086 0.914 20 H 0.094 0.906 21 H 0.080 0.920 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.152 0.848 25 H -0.025 1.025 26 H 0.018 0.982 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.040 5.943 2.074 13.586 hybrid contribution 0.647 -1.645 -1.587 2.376 sum -11.393 4.298 0.487 12.187 Atomic orbital electron populations 1.21840 0.92118 1.02674 1.03128 1.22605 0.96301 0.98082 0.87087 0.90121 1.23082 0.95623 0.99667 0.99922 1.23001 0.90870 0.96301 0.96469 0.95874 1.60691 1.07541 1.44407 1.18159 1.19224 0.89562 0.87957 0.95055 1.21554 0.98946 1.04308 1.32829 0.91697 1.25992 1.02262 0.94835 0.96696 1.70095 1.30144 1.12293 1.44952 0.85290 0.78154 0.77852 0.78738 1.19805 1.20602 1.18656 1.22872 0.91854 0.99967 0.92718 1.63456 1.02553 1.26064 1.37061 0.91392 0.90647 0.92030 0.90407 0.90250 0.84764 1.02515 0.98154 0.92558 0.92197 0.91169 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.27 71.98 0.67 -1.77 16 2 C 0.07 1.69 3.85 45.06 0.17 1.86 16 3 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 4 C -0.14 -3.92 6.23 31.49 0.20 -3.72 16 5 C 0.05 1.66 3.37 45.81 0.15 1.82 16 6 H 0.02 0.91 7.86 -2.39 -0.02 0.89 16 7 N -0.68 -29.85 6.26 -490.96 -3.07 -32.92 16 8 C 0.21 11.53 5.28 85.56 0.45 11.99 16 9 C -0.54 -31.28 9.32 25.60 0.24 -31.04 16 10 H 0.06 3.65 7.81 -2.92 -0.02 3.63 16 11 C 0.00 0.02 5.46 84.66 0.46 0.48 16 12 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 13 Si 0.98 44.69 29.54 68.60 2.03 46.71 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 17 C 0.06 1.97 7.09 86.45 0.61 2.58 16 18 N -0.66 -18.29 7.42 -478.96 -3.55 -21.84 16 19 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.06 0.98 8.12 -2.38 -0.02 0.97 16 22 H 0.08 2.11 7.57 -2.39 -0.02 2.10 16 23 H 0.08 1.89 7.85 -2.39 -0.02 1.88 16 24 H 0.33 13.94 8.12 -89.69 -0.73 13.21 16 25 H -0.04 -2.53 8.07 -2.39 -0.02 -2.55 16 26 H 0.00 0.02 8.11 -2.39 -0.02 0.00 16 27 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.07 2.74 8.06 -2.39 -0.02 2.72 16 30 H 0.34 8.15 8.64 -89.69 -0.78 7.37 16 Total: -1.00 -63.98 248.78 -1.74 -65.73 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.39 Total: 17.11 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: 2.96 Total: -17.80 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -6.34 Total: -111.75 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -63.98 -1.74 -65.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885247024.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.050 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds