Wall clock time and date at job start Mon Mar 30 2020 02:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 110.72274 * 2 1 4 4 C 1.54934 * 110.66803 * 123.09846 * 2 1 3 5 5 C 1.54597 * 102.92105 * 155.84982 * 4 2 1 6 6 H 1.09005 * 110.30714 * 96.95804 * 5 4 2 7 7 N 1.46900 * 110.30700 * 219.02530 * 5 4 2 8 8 C 1.46902 * 110.99946 * 205.00045 * 7 5 4 9 9 C 1.50702 * 109.46716 * 180.02562 * 8 7 5 10 10 H 1.07994 * 120.00618 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99579 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99837 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99791 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47277 * 90.00012 * 13 11 9 15 15 H 1.48505 * 109.46756 * 209.99729 * 13 11 9 16 16 H 1.48492 * 109.47018 * 329.99657 * 13 11 9 17 17 C 1.53990 * 105.14143 * 338.04435 * 5 4 2 18 18 N 1.47907 * 107.05675 * 358.77466 * 17 5 4 19 19 H 1.09002 * 109.47216 * 296.90453 * 1 2 3 20 20 H 1.09008 * 109.47097 * 56.90390 * 1 2 3 21 21 H 1.09001 * 109.47322 * 176.89648 * 1 2 3 22 22 H 1.09000 * 110.72047 * 37.49288 * 4 2 1 23 23 H 1.09001 * 110.72140 * 274.20910 * 4 2 1 24 24 H 1.00900 * 110.99967 * 328.95759 * 7 5 4 25 25 H 1.08996 * 109.47064 * 300.00314 * 8 7 5 26 26 H 1.08996 * 109.46713 * 60.00230 * 8 7 5 27 27 H 0.96999 * 119.99637 * 179.97438 * 12 11 9 28 28 H 1.08996 * 109.92296 * 118.12992 * 17 5 4 29 29 H 1.09002 * 109.91601 * 239.42291 * 17 5 4 30 30 H 1.00900 * 111.00031 * 145.84960 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9157 1.0195 0.0000 4 6 2.0768 -0.7916 1.2144 5 6 3.4853 -1.2197 0.7422 6 1 4.2374 -0.5258 1.1178 7 7 3.7816 -2.5854 1.1948 8 6 5.2307 -2.8026 1.2995 9 6 5.4951 -4.2114 1.7648 10 1 4.6694 -4.8788 1.9625 11 6 6.7913 -4.6484 1.9380 12 7 7.7969 -3.8355 1.6976 13 14 7.1191 -6.3948 2.5140 14 1 7.2379 -7.2907 1.3357 15 1 8.3835 -6.4302 3.2922 16 1 5.9967 -6.8518 3.3722 17 6 3.4279 -1.1646 -0.7957 18 7 2.0542 -0.7587 -1.1643 19 1 -0.3634 0.4650 0.9164 20 1 -0.3634 0.5612 -0.8610 21 1 -0.3634 -1.0262 -0.0556 22 1 1.4561 -1.6644 1.4170 23 1 2.1430 -0.1513 2.0941 24 1 3.3220 -2.7837 2.0710 25 1 5.6923 -2.6499 0.3240 26 1 5.6529 -2.0978 2.0156 27 1 8.7087 -4.1428 1.8198 28 1 4.1441 -0.4321 -1.1681 29 1 3.6486 -2.1480 -1.2109 30 1 2.0568 -0.1881 -1.9964 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885247025.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:20 Heat of formation + Delta-G solvation = -29.445863 kcal Electronic energy + Delta-G solvation = -11203.957647 eV Core-core repulsion = 9225.443091 eV Total energy + Delta-G solvation = -1978.514556 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.87374 -36.36923 -34.37547 -31.85776 -30.55118 -27.72237 -26.15157 -23.89846 -21.39524 -21.04273 -18.57598 -17.84455 -16.71782 -16.57803 -15.31692 -15.27682 -14.71699 -14.20828 -13.88490 -13.51479 -13.37894 -13.00131 -12.67287 -12.64902 -12.49467 -12.25586 -11.97317 -11.82658 -11.60029 -11.21030 -10.68156 -9.45603 -9.15816 -8.24299 -6.35830 1.40677 1.42999 1.54224 2.39344 3.08984 3.26463 3.49158 3.72538 3.84592 4.25255 4.26708 4.53606 4.56825 4.70343 4.83714 4.93755 5.00059 5.06443 5.14945 5.20831 5.26953 5.42059 5.61178 5.87075 6.02472 6.44143 6.49668 6.72242 6.87572 7.35422 8.87504 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.090342 B = 0.007801 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 309.858765 B = 3588.415582 C = 3689.741579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.065 3.935 3 H 0.059 0.941 4 C -0.115 4.115 5 C 0.067 3.933 6 H 0.028 0.972 7 N -0.677 5.677 8 C 0.210 3.790 9 C -0.538 4.538 10 H 0.064 0.936 11 C 0.000 4.000 12 N -0.935 5.935 13 Si 0.976 3.024 14 H -0.273 1.273 15 H -0.280 1.280 16 H -0.262 1.262 17 C 0.056 3.944 18 N -0.669 5.669 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.053 0.947 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.336 0.664 25 H -0.001 1.001 26 H -0.041 1.041 27 H 0.266 0.734 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 7.442 -1.933 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.045 4.045 3 H 0.077 0.923 4 C -0.153 4.153 5 C -0.044 4.044 6 H 0.046 0.954 7 N -0.309 5.309 8 C 0.082 3.918 9 C -0.576 4.576 10 H 0.082 0.918 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.800 3.200 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.187 1.187 17 C -0.074 4.074 18 N -0.299 5.299 19 H 0.092 0.908 20 H 0.084 0.916 21 H 0.072 0.928 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.154 0.846 25 H 0.017 0.983 26 H -0.023 1.023 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.693 6.548 -2.425 13.619 hybrid contribution 1.567 0.599 0.852 1.881 sum -10.126 7.147 -1.573 12.494 Atomic orbital electron populations 1.21618 0.92187 1.02281 1.02493 1.22627 0.97016 0.95100 0.89731 0.92347 1.22749 0.93954 1.00490 0.98108 1.22430 0.96908 0.89599 0.95461 0.95379 1.60639 1.11163 1.23553 1.35503 1.19235 0.83965 0.95011 0.93589 1.21559 0.92631 0.98415 1.44969 0.91751 1.25987 0.95740 1.02635 0.95410 1.70096 0.99382 1.37864 1.50171 0.85291 0.77758 0.78538 0.78458 1.19854 1.20547 1.18661 1.22526 0.89818 1.00087 0.94965 1.63005 1.18593 1.42499 1.05842 0.90822 0.91649 0.92814 0.90362 0.89960 0.84622 0.98326 1.02298 0.92567 0.94389 0.92027 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.62 71.98 0.69 -1.76 16 2 C 0.06 1.56 3.84 45.26 0.17 1.73 16 3 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -3.27 5.95 31.80 0.19 -3.08 16 5 C 0.07 2.49 3.32 45.79 0.15 2.65 16 6 H 0.03 1.11 7.82 -2.38 -0.02 1.09 16 7 N -0.68 -30.55 6.18 -491.04 -3.04 -33.58 16 8 C 0.21 11.63 5.29 85.56 0.45 12.08 16 9 C -0.54 -31.50 9.32 25.60 0.24 -31.26 16 10 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 11 C 0.00 0.02 5.46 84.66 0.46 0.49 16 12 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 13 Si 0.98 44.95 29.54 68.60 2.03 46.98 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 17 C 0.06 1.97 7.30 86.44 0.63 2.60 16 18 N -0.67 -18.78 7.18 -480.36 -3.45 -22.23 16 19 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 20 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 21 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.08 2.32 7.87 -2.39 -0.02 2.30 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.34 14.31 8.32 -89.69 -0.75 13.56 16 25 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H -0.04 -2.41 8.07 -2.39 -0.02 -2.43 16 27 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 30 H 0.34 7.92 8.92 -89.69 -0.80 7.12 16 Total: -1.00 -65.08 249.63 -1.61 -66.70 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.43 Total: 15.85 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 2.99 Total: -16.55 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -6.20 Total: -112.98 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.08 -1.61 -66.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885247025.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.253 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds