Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.49849 * 2 1 4 4 C 1.53039 * 109.49501 * 120.06543 * 2 1 3 5 5 C 1.53113 * 109.50208 * 181.31086 * 4 2 1 6 6 C 1.53184 * 109.33154 * 298.65939 * 5 4 2 7 7 N 1.46918 * 108.77829 * 54.63589 * 6 5 4 8 8 C 1.36938 * 120.63262 * 126.36814 * 7 6 5 9 9 H 1.08001 * 119.99906 * 208.01879 * 8 7 6 10 10 C 1.38810 * 120.00032 * 28.01563 * 8 7 6 11 11 N 1.31613 * 119.99817 * 17.53199 * 10 8 7 12 12 Si 1.86798 * 119.99885 * 197.52590 * 10 8 7 13 13 H 1.48496 * 109.46937 * 94.07286 * 12 10 8 14 14 H 1.48504 * 109.47328 * 214.06752 * 12 10 8 15 15 H 1.48500 * 109.47493 * 334.07095 * 12 10 8 16 16 C 1.46931 * 118.74027 * 306.38942 * 7 6 5 17 17 H 1.09005 * 109.46715 * 59.99947 * 1 2 3 18 18 H 1.08999 * 109.47661 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47320 * 300.00496 * 1 2 3 20 20 H 1.00900 * 111.00208 * 299.99986 * 3 2 1 21 21 H 1.00900 * 110.99925 * 63.95312 * 3 2 1 22 22 H 1.08997 * 109.46340 * 301.36804 * 4 2 1 23 23 H 1.09001 * 109.46190 * 61.33020 * 4 2 1 24 24 H 1.08999 * 109.48375 * 178.69617 * 5 4 2 25 25 H 1.09002 * 109.50933 * 58.63698 * 5 4 2 26 26 H 1.08999 * 109.58805 * 294.84123 * 6 5 4 27 27 H 1.09004 * 109.70370 * 174.49364 * 6 5 4 28 28 H 0.97000 * 119.99849 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.58482 * 293.82522 * 16 7 6 30 30 H 1.08994 * 109.58939 * 173.39788 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0203 1.3847 0.0000 4 6 2.0407 -0.7228 1.2485 5 6 3.5715 -0.6943 1.2654 6 6 4.1058 -1.4256 0.0300 7 7 3.5047 -0.8282 -1.1701 8 6 4.2932 -0.3772 -2.1948 9 1 3.9479 0.4264 -2.8284 10 6 5.5363 -0.9527 -2.4190 11 7 5.8208 -2.1278 -1.8992 12 14 6.8053 -0.0592 -3.4587 13 1 7.7020 0.7292 -2.5759 14 1 7.6072 -1.0499 -4.2208 15 1 6.1157 0.8532 -4.4058 16 6 2.0413 -0.7235 -1.2498 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 1.6970 1.8828 -0.8158 21 1 1.7511 1.8636 0.8463 22 1 1.6576 -0.2243 2.1390 23 1 1.6971 -1.7571 1.2355 24 1 3.9344 -1.1889 2.1663 25 1 3.9165 0.3396 1.2538 26 1 3.8386 -2.4809 0.0859 27 1 5.1903 -1.3254 -0.0160 28 1 6.6894 -2.5302 -2.0562 29 1 1.6056 -1.7214 -1.2982 30 1 1.7633 -0.1577 -2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885247406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = 13.414221 kcal Electronic energy + Delta-G solvation = -11997.315498 eV Core-core repulsion = 10020.659494 eV Total energy + Delta-G solvation = -1976.656003 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.20526 -34.16833 -31.62849 -30.29823 -28.69394 -25.85611 -25.13939 -21.95759 -20.59154 -18.25549 -16.52306 -15.18686 -14.71672 -14.27631 -13.77794 -13.32363 -12.84897 -12.71457 -12.21465 -11.97686 -11.52498 -11.21468 -10.91037 -10.82839 -10.61779 -10.19063 -9.96266 -9.78871 -9.46378 -9.25134 -8.30503 -7.93422 -6.46738 -5.63282 -3.02538 3.47353 3.53911 3.55287 4.62153 5.06101 5.32367 5.47998 5.51155 5.67232 5.83178 5.92939 6.06652 6.16874 6.30756 6.43879 6.54190 6.67466 6.80995 6.93689 6.98045 7.05659 7.60281 7.82567 7.87600 7.95181 8.07600 8.61403 9.37732 10.02032 10.59800 11.45320 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058791 B = 0.013521 C = 0.012486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.152435 B = 2070.289044 C = 2241.944610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.095 3.905 3 N -0.816 5.816 4 C -0.094 4.094 5 C -0.136 4.136 6 C 0.173 3.827 7 N -0.577 5.577 8 C -0.234 4.234 9 H 0.062 0.938 10 C -0.004 4.004 11 N -0.907 5.907 12 Si 0.901 3.099 13 H -0.290 1.290 14 H -0.294 1.294 15 H -0.280 1.280 16 C 0.163 3.837 17 H 0.049 0.951 18 H 0.056 0.944 19 H 0.045 0.955 20 H 0.332 0.668 21 H 0.323 0.677 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.084 0.916 28 H 0.251 0.749 29 H 0.018 0.982 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.865 3.839 4.746 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.000 4.000 3 N -0.345 5.345 4 C -0.133 4.133 5 C -0.175 4.175 6 C 0.047 3.953 7 N -0.298 5.298 8 C -0.364 4.364 9 H 0.079 0.921 10 C -0.201 4.201 11 N -0.553 5.553 12 Si 0.732 3.268 13 H -0.217 1.217 14 H -0.221 1.221 15 H -0.206 1.206 16 C 0.036 3.964 17 H 0.068 0.932 18 H 0.075 0.925 19 H 0.064 0.936 20 H 0.145 0.855 21 H 0.135 0.865 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.029 0.971 27 H 0.102 0.898 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.960 3.409 4.662 9.044 hybrid contribution -0.407 0.683 -0.415 0.897 sum -7.366 4.092 4.247 9.436 Atomic orbital electron populations 1.22621 0.98674 1.01839 1.00571 1.21425 0.89796 0.89991 0.98741 1.58651 1.67663 1.02266 1.05873 1.21421 0.97766 0.98804 0.95265 1.22091 0.94122 1.02164 0.99100 1.20718 0.99172 0.92424 0.82937 1.43755 0.98835 1.70908 1.16271 1.19150 0.98307 1.11127 1.07775 0.92063 1.24978 0.99959 0.95488 0.99721 1.70051 1.21868 1.14445 1.48903 0.86287 0.81927 0.78864 0.79770 1.21681 1.22064 1.20581 1.20829 0.86566 0.95634 0.93381 0.93160 0.92509 0.93618 0.85504 0.86539 0.94234 0.92803 0.94342 0.91412 0.97130 0.89822 0.93924 0.96441 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.77 37.16 0.33 -2.19 16 2 C 0.10 1.67 0.84 -131.48 -0.11 1.56 16 3 N -0.82 -13.88 7.96 0.84 0.01 -13.88 16 4 C -0.09 -1.69 4.83 -26.65 -0.13 -1.82 16 5 C -0.14 -2.79 5.93 -26.58 -0.16 -2.95 16 6 C 0.17 4.37 5.31 -3.72 -0.02 4.35 16 7 N -0.58 -14.97 2.91 -172.33 -0.50 -15.47 16 8 C -0.23 -6.64 9.58 -15.06 -0.14 -6.79 16 9 H 0.06 1.73 7.89 -52.49 -0.41 1.31 16 10 C 0.00 -0.12 4.90 -17.43 -0.09 -0.20 16 11 N -0.91 -27.29 11.22 55.49 0.62 -26.66 16 12 Si 0.90 22.55 29.59 -169.99 -5.03 17.52 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 16 C 0.16 3.55 5.40 -3.71 -0.02 3.53 16 17 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 18 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.33 5.32 9.00 -39.29 -0.35 4.96 16 21 H 0.32 4.73 8.99 -39.29 -0.35 4.37 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 1.47 7.53 -51.93 -0.39 1.08 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 2.36 6.06 -51.93 -0.31 2.05 16 28 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 239.41 15.07 3.61 3.61 Total: -1.00 -30.31 239.41 -6.39 -36.70 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.76 Total: 2.68 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -0.34 Total: -4.50 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.13 Total: -56.01 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.31 -6.39 -36.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885247406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.116 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds