Wall clock time and date at job start Mon Mar 30 2020 02:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.49849 * 2 1 4 4 C 1.53039 * 109.49501 * 120.06543 * 2 1 3 5 5 C 1.53113 * 109.50208 * 181.31086 * 4 2 1 6 6 C 1.53184 * 109.33154 * 298.65939 * 5 4 2 7 7 N 1.46918 * 108.77829 * 54.63589 * 6 5 4 8 8 C 1.36938 * 120.63262 * 126.36814 * 7 6 5 9 9 H 1.08001 * 119.99906 * 208.01879 * 8 7 6 10 10 C 1.38810 * 120.00032 * 28.01563 * 8 7 6 11 11 N 1.31613 * 119.99817 * 17.53199 * 10 8 7 12 12 Si 1.86798 * 119.99885 * 197.52590 * 10 8 7 13 13 H 1.48496 * 109.46937 * 94.07286 * 12 10 8 14 14 H 1.48504 * 109.47328 * 214.06752 * 12 10 8 15 15 H 1.48500 * 109.47493 * 334.07095 * 12 10 8 16 16 C 1.46931 * 118.74027 * 306.38942 * 7 6 5 17 17 H 1.09005 * 109.46715 * 59.99947 * 1 2 3 18 18 H 1.08999 * 109.47661 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47320 * 300.00496 * 1 2 3 20 20 H 1.00900 * 111.00208 * 299.99986 * 3 2 1 21 21 H 1.00900 * 110.99925 * 63.95312 * 3 2 1 22 22 H 1.08997 * 109.46340 * 301.36804 * 4 2 1 23 23 H 1.09001 * 109.46190 * 61.33020 * 4 2 1 24 24 H 1.08999 * 109.48375 * 178.69617 * 5 4 2 25 25 H 1.09002 * 109.50933 * 58.63698 * 5 4 2 26 26 H 1.08999 * 109.58805 * 294.84123 * 6 5 4 27 27 H 1.09004 * 109.70370 * 174.49364 * 6 5 4 28 28 H 0.97000 * 119.99849 * 179.97438 * 11 10 8 29 29 H 1.08997 * 109.58482 * 293.82522 * 16 7 6 30 30 H 1.08994 * 109.58939 * 173.39788 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0203 1.3847 0.0000 4 6 2.0407 -0.7228 1.2485 5 6 3.5715 -0.6943 1.2654 6 6 4.1058 -1.4256 0.0300 7 7 3.5047 -0.8282 -1.1701 8 6 4.2932 -0.3772 -2.1948 9 1 3.9479 0.4264 -2.8284 10 6 5.5363 -0.9527 -2.4190 11 7 5.8208 -2.1278 -1.8992 12 14 6.8053 -0.0592 -3.4587 13 1 7.7020 0.7292 -2.5759 14 1 7.6072 -1.0499 -4.2208 15 1 6.1157 0.8532 -4.4058 16 6 2.0413 -0.7235 -1.2498 17 1 -0.3633 0.5139 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 1.6970 1.8828 -0.8158 21 1 1.7511 1.8636 0.8463 22 1 1.6576 -0.2243 2.1390 23 1 1.6971 -1.7571 1.2355 24 1 3.9344 -1.1889 2.1663 25 1 3.9165 0.3396 1.2538 26 1 3.8386 -2.4809 0.0859 27 1 5.1903 -1.3254 -0.0160 28 1 6.6894 -2.5302 -2.0562 29 1 1.6056 -1.7214 -1.2982 30 1 1.7633 -0.1577 -2.1390 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885247406.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:25 Heat of formation + Delta-G solvation = -7.935225 kcal Electronic energy + Delta-G solvation = -11998.241279 eV Core-core repulsion = 10020.659494 eV Total energy + Delta-G solvation = -1977.581785 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.80234 -36.00826 -33.44554 -32.23227 -30.04945 -27.43035 -27.08803 -23.79206 -22.33977 -19.83010 -18.57091 -16.80661 -16.58205 -15.85302 -15.59850 -14.97438 -14.57084 -14.25901 -13.84378 -13.36151 -13.09960 -12.92805 -12.73018 -12.62637 -12.31309 -12.14136 -11.88368 -11.60365 -11.23753 -10.95945 -10.46331 -9.23560 -8.55492 -7.79813 -5.22274 1.46943 1.49380 1.57916 2.55602 3.32997 3.68596 3.89687 3.96419 4.20823 4.32521 4.51614 4.72587 4.77174 4.88777 4.99361 5.07002 5.09995 5.11235 5.25441 5.37476 5.49031 5.62174 5.72989 5.86233 6.44946 6.58574 6.89217 7.22324 7.95886 8.47940 9.26177 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.058791 B = 0.013521 C = 0.012486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.152435 B = 2070.289044 C = 2241.944610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.832 5.832 4 C -0.092 4.092 5 C -0.124 4.124 6 C 0.178 3.822 7 N -0.593 5.593 8 C -0.242 4.242 9 H 0.061 0.939 10 C -0.059 4.059 11 N -0.940 5.940 12 Si 0.966 3.034 13 H -0.289 1.289 14 H -0.296 1.296 15 H -0.268 1.268 16 C 0.157 3.843 17 H 0.057 0.943 18 H 0.058 0.942 19 H 0.069 0.931 20 H 0.338 0.662 21 H 0.340 0.660 22 H 0.072 0.928 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.058 0.942 26 H -0.012 1.012 27 H 0.046 0.954 28 H 0.247 0.753 29 H 0.011 0.989 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 5.128 5.429 11.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.009 3.991 3 N -0.362 5.362 4 C -0.130 4.130 5 C -0.163 4.163 6 C 0.053 3.947 7 N -0.315 5.315 8 C -0.372 4.372 9 H 0.078 0.922 10 C -0.253 4.253 11 N -0.588 5.588 12 Si 0.795 3.205 13 H -0.217 1.217 14 H -0.223 1.223 15 H -0.193 1.193 16 C 0.030 3.970 17 H 0.076 0.924 18 H 0.078 0.922 19 H 0.088 0.912 20 H 0.151 0.849 21 H 0.154 0.846 22 H 0.091 0.909 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.006 0.994 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.029 0.971 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.329 4.721 5.357 10.971 hybrid contribution -0.027 0.264 -0.635 0.688 sum -8.356 4.986 4.722 10.816 Atomic orbital electron populations 1.22478 0.95431 1.02570 1.02179 1.21190 0.92083 0.89787 0.96065 1.58543 1.68404 1.02172 1.07098 1.21423 0.95318 0.99452 0.96825 1.21896 0.96421 1.00778 0.97188 1.20534 0.97173 0.91896 0.85138 1.43975 1.00581 1.70927 1.16039 1.19442 0.98935 1.10779 1.08071 0.92173 1.25735 1.01836 0.96204 1.01550 1.70204 1.21977 1.15916 1.50681 0.85266 0.79317 0.77647 0.78316 1.21668 1.22311 1.19313 1.21033 0.84214 0.95881 0.95830 0.92387 0.92242 0.91230 0.84903 0.84634 0.90894 0.92741 0.92579 0.92351 0.99431 0.93600 0.94417 0.97144 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.77 71.98 0.63 -3.47 16 2 C 0.10 3.36 0.84 3.61 0.00 3.36 16 3 N -0.83 -26.08 7.96 -151.26 -1.20 -27.29 16 4 C -0.09 -3.03 4.83 30.64 0.15 -2.88 16 5 C -0.12 -4.95 5.93 30.69 0.18 -4.76 16 6 C 0.18 9.16 5.31 86.36 0.46 9.62 16 7 N -0.59 -31.05 2.91 -699.12 -2.04 -33.08 16 8 C -0.24 -13.87 9.58 84.03 0.80 -13.07 16 9 H 0.06 3.40 7.89 -2.91 -0.02 3.38 16 10 C -0.06 -3.45 4.90 84.86 0.42 -3.03 16 11 N -0.94 -58.17 11.22 21.65 0.24 -57.93 16 12 Si 0.97 46.98 29.59 68.60 2.03 49.01 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 C 0.16 6.69 5.40 86.36 0.47 7.15 16 17 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 18 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 19 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 20 H 0.34 9.99 9.00 -89.69 -0.81 9.18 16 21 H 0.34 8.73 8.99 -89.69 -0.81 7.92 16 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.06 2.45 7.53 -2.39 -0.02 2.43 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.05 2.68 6.06 -2.38 -0.01 2.66 16 28 H 0.25 14.78 8.31 -92.71 -0.77 14.00 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 1.94 7.93 -2.39 -0.02 1.93 16 Total: -1.00 -65.56 239.41 1.65 -63.91 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.49 Total: 12.45 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: 3.11 Total: -7.07 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -3.00 Total: -118.29 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -65.56 1.65 -63.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885247406.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.972 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds