Wall clock time and date at job start Mon Mar 30 2020 02:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.49578 * 2 1 4 4 C 1.53043 * 109.52964 * 239.91939 * 2 1 3 5 5 C 1.53031 * 109.54182 * 178.66860 * 4 2 1 6 6 C 1.53198 * 109.31417 * 61.36347 * 5 4 2 7 7 N 1.46927 * 108.77454 * 305.36246 * 6 5 4 8 8 C 1.36931 * 120.63226 * 233.63047 * 7 6 5 9 9 H 1.08003 * 120.00364 * 27.67143 * 8 7 6 10 10 C 1.38817 * 119.99893 * 207.66493 * 8 7 6 11 11 N 1.31619 * 119.99899 * 17.36957 * 10 8 7 12 12 Si 1.86798 * 119.99991 * 197.36095 * 10 8 7 13 13 H 1.48501 * 109.47228 * 60.00233 * 12 10 8 14 14 H 1.48498 * 109.46971 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47385 * 300.00374 * 12 10 8 16 16 C 1.46935 * 118.73543 * 53.61035 * 7 6 5 17 17 H 1.08994 * 109.47113 * 60.00461 * 1 2 3 18 18 H 1.09004 * 109.46747 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47542 * 300.00111 * 1 2 3 20 20 H 1.00902 * 111.00112 * 60.06417 * 3 2 1 21 21 H 1.00906 * 111.00121 * 184.01770 * 3 2 1 22 22 H 1.09007 * 109.45420 * 298.69010 * 4 2 1 23 23 H 1.08996 * 109.45863 * 58.63896 * 4 2 1 24 24 H 1.09003 * 109.49433 * 301.41273 * 5 4 2 25 25 H 1.09000 * 109.50058 * 181.31403 * 5 4 2 26 26 H 1.09004 * 109.58292 * 185.58128 * 6 5 4 27 27 H 1.08988 * 109.58662 * 65.15336 * 6 5 4 28 28 H 0.97000 * 119.99691 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.58016 * 186.60161 * 16 7 6 30 30 H 1.08996 * 109.70183 * 66.24784 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0202 1.3848 0.0000 4 6 2.0416 -0.7229 -1.2481 5 6 3.5715 -0.6942 -1.2653 6 6 4.1060 -1.4255 -0.0298 7 7 3.5047 -0.8280 1.1703 8 6 4.2932 -0.3769 2.1949 9 1 5.2983 -0.0369 1.9935 10 6 3.8005 -0.3565 3.4926 11 7 2.7375 -1.0673 3.8042 12 14 4.6465 0.6795 4.7966 13 1 4.6290 2.1059 4.3838 14 1 3.9312 0.5290 6.0892 15 1 6.0521 0.2269 4.9535 16 6 2.0412 -0.7234 1.2498 17 1 -0.3633 0.5137 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 1.6978 1.8826 0.8163 21 1 3.0268 1.4121 -0.0660 22 1 1.6979 -1.7573 -1.2350 23 1 1.6589 -0.2247 -2.1388 24 1 3.9161 0.3399 -1.2534 25 1 3.9346 -1.1888 -2.1662 26 1 5.1902 -1.3228 0.0150 27 1 3.8388 -2.4806 -0.0857 28 1 2.3930 -1.0527 4.7108 29 1 1.7633 -0.1576 2.1390 30 1 1.6037 -1.7204 1.2996 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885247407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:28 Heat of formation + Delta-G solvation = 8.807268 kcal Electronic energy + Delta-G solvation = -12107.860161 eV Core-core repulsion = 10131.004385 eV Total energy + Delta-G solvation = -1976.855776 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.30685 -33.88920 -32.22175 -29.94713 -28.66309 -25.85669 -25.25709 -22.08611 -20.57104 -18.12747 -16.75665 -15.34321 -14.72681 -14.04994 -13.78981 -13.30972 -13.11570 -12.69613 -12.13421 -11.61055 -11.38951 -11.10104 -11.06742 -10.93574 -10.67787 -10.39790 -10.23243 -9.86043 -9.51678 -9.41370 -8.51450 -7.90187 -6.64197 -5.80252 -3.24017 3.35622 3.41837 3.42739 4.46755 5.28186 5.43152 5.44784 5.56939 5.67421 5.84095 6.11862 6.19881 6.27152 6.39512 6.46492 6.54618 6.64302 6.78681 6.86039 6.88253 7.03036 7.29595 7.60294 7.75831 8.06229 8.31352 8.42350 9.18625 9.82486 10.39798 11.26413 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.049021 B = 0.015309 C = 0.013743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.049078 B = 1828.535706 C = 2036.897312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.084 3.916 3 N -0.835 5.835 4 C -0.095 4.095 5 C -0.136 4.136 6 C 0.141 3.859 7 N -0.592 5.592 8 C -0.256 4.256 9 H 0.065 0.935 10 C 0.002 3.998 11 N -0.901 5.901 12 Si 0.902 3.098 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.283 1.283 16 C 0.149 3.851 17 H 0.050 0.950 18 H 0.051 0.949 19 H 0.049 0.951 20 H 0.330 0.670 21 H 0.343 0.657 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.016 0.984 28 H 0.254 0.746 29 H 0.086 0.914 30 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.716 1.702 -6.562 6.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.011 4.011 3 N -0.365 5.365 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.015 3.985 7 N -0.314 5.314 8 C -0.385 4.385 9 H 0.083 0.917 10 C -0.196 4.196 11 N -0.546 5.546 12 Si 0.732 3.268 13 H -0.210 1.210 14 H -0.217 1.217 15 H -0.209 1.209 16 C 0.022 3.978 17 H 0.069 0.931 18 H 0.070 0.930 19 H 0.068 0.932 20 H 0.141 0.859 21 H 0.158 0.842 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -2.193 1.745 -7.063 7.599 hybrid contribution 0.875 0.112 1.705 1.920 sum -1.318 1.858 -5.358 5.822 Atomic orbital electron populations 1.21686 0.95361 1.00775 1.01031 1.21439 0.93460 0.89365 0.96796 1.59266 1.17075 1.13799 1.46328 1.21392 0.95780 0.99061 0.97066 1.22041 0.95987 1.01051 0.98498 1.20964 0.96408 0.94226 0.86910 1.44051 1.01638 1.69474 1.16266 1.19160 0.97837 1.35601 0.85926 0.91712 1.25050 0.98543 0.99071 0.96976 1.70040 1.25599 1.40071 1.18855 0.86379 0.78949 0.80543 0.80964 1.21003 1.21663 1.20896 1.21525 0.83410 0.97631 0.95240 0.93105 0.92988 0.93189 0.85900 0.84242 0.92818 0.93126 0.92057 0.93288 0.92990 0.96641 0.93602 0.89570 0.96647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.78 37.16 0.33 -1.91 16 2 C 0.08 1.63 0.95 -131.48 -0.12 1.51 16 3 N -0.84 -15.92 8.84 0.84 0.01 -15.91 16 4 C -0.09 -1.71 4.89 -26.69 -0.13 -1.84 16 5 C -0.14 -2.47 5.76 -26.61 -0.15 -2.62 16 6 C 0.14 3.02 6.52 -3.71 -0.02 3.00 16 7 N -0.59 -14.74 2.58 -172.31 -0.44 -15.19 16 8 C -0.26 -6.96 9.59 -15.06 -0.14 -7.11 16 9 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 10 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 11 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 12 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.15 3.57 4.20 -3.71 -0.02 3.55 16 17 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 18 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 19 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 20 H 0.33 6.31 9.00 -39.29 -0.35 5.96 16 21 H 0.34 6.90 6.55 -39.29 -0.26 6.64 16 22 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.06 1.13 6.48 -51.93 -0.34 0.79 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 27 H 0.02 0.34 8.14 -51.94 -0.42 -0.08 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.09 2.30 6.03 -51.93 -0.31 1.99 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 236.43 15.07 3.56 3.56 Total: -1.00 -28.35 236.43 -6.24 -34.58 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -4.60 Total: 7.35 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -0.35 Total: -5.44 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.18 Total: -56.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.35 -6.24 -34.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885247407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.391 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds