Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.49578 * 2 1 4 4 C 1.53043 * 109.52964 * 239.91939 * 2 1 3 5 5 C 1.53031 * 109.54182 * 178.66860 * 4 2 1 6 6 C 1.53198 * 109.31417 * 61.36347 * 5 4 2 7 7 N 1.46927 * 108.77454 * 305.36246 * 6 5 4 8 8 C 1.36931 * 120.63226 * 233.63047 * 7 6 5 9 9 H 1.08003 * 120.00364 * 27.67143 * 8 7 6 10 10 C 1.38817 * 119.99893 * 207.66493 * 8 7 6 11 11 N 1.31619 * 119.99899 * 17.36957 * 10 8 7 12 12 Si 1.86798 * 119.99991 * 197.36095 * 10 8 7 13 13 H 1.48501 * 109.47228 * 60.00233 * 12 10 8 14 14 H 1.48498 * 109.46971 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47385 * 300.00374 * 12 10 8 16 16 C 1.46935 * 118.73543 * 53.61035 * 7 6 5 17 17 H 1.08994 * 109.47113 * 60.00461 * 1 2 3 18 18 H 1.09004 * 109.46747 * 179.97438 * 1 2 3 19 19 H 1.09002 * 109.47542 * 300.00111 * 1 2 3 20 20 H 1.00902 * 111.00112 * 60.06417 * 3 2 1 21 21 H 1.00906 * 111.00121 * 184.01770 * 3 2 1 22 22 H 1.09007 * 109.45420 * 298.69010 * 4 2 1 23 23 H 1.08996 * 109.45863 * 58.63896 * 4 2 1 24 24 H 1.09003 * 109.49433 * 301.41273 * 5 4 2 25 25 H 1.09000 * 109.50058 * 181.31403 * 5 4 2 26 26 H 1.09004 * 109.58292 * 185.58128 * 6 5 4 27 27 H 1.08988 * 109.58662 * 65.15336 * 6 5 4 28 28 H 0.97000 * 119.99691 * 180.02562 * 11 10 8 29 29 H 1.08996 * 109.58016 * 186.60161 * 16 7 6 30 30 H 1.08996 * 109.70183 * 66.24784 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0202 1.3848 0.0000 4 6 2.0416 -0.7229 -1.2481 5 6 3.5715 -0.6942 -1.2653 6 6 4.1060 -1.4255 -0.0298 7 7 3.5047 -0.8280 1.1703 8 6 4.2932 -0.3769 2.1949 9 1 5.2983 -0.0369 1.9935 10 6 3.8005 -0.3565 3.4926 11 7 2.7375 -1.0673 3.8042 12 14 4.6465 0.6795 4.7966 13 1 4.6290 2.1059 4.3838 14 1 3.9312 0.5290 6.0892 15 1 6.0521 0.2269 4.9535 16 6 2.0412 -0.7234 1.2498 17 1 -0.3633 0.5137 -0.8900 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 1.6978 1.8826 0.8163 21 1 3.0268 1.4121 -0.0660 22 1 1.6979 -1.7573 -1.2350 23 1 1.6589 -0.2247 -2.1388 24 1 3.9161 0.3399 -1.2534 25 1 3.9346 -1.1888 -2.1662 26 1 5.1902 -1.3228 0.0150 27 1 3.8388 -2.4806 -0.0857 28 1 2.3930 -1.0527 4.7108 29 1 1.7633 -0.1576 2.1390 30 1 1.6037 -1.7204 1.2996 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885247407.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -10.216123 kcal Electronic energy + Delta-G solvation = -12108.685077 eV Core-core repulsion = 10131.004385 eV Total energy + Delta-G solvation = -1977.680692 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.96983 -35.73754 -33.97619 -31.80233 -30.18769 -27.55714 -27.12761 -23.88328 -22.24147 -19.77980 -18.69727 -17.10309 -16.46713 -15.77923 -15.57852 -15.02225 -14.80669 -14.38338 -13.81769 -13.20817 -12.95278 -12.89621 -12.77612 -12.59275 -12.46987 -12.23400 -12.01620 -11.56621 -11.19574 -11.04676 -10.58208 -9.55516 -8.64009 -7.87990 -5.35526 1.44608 1.46319 1.53262 2.48307 3.23532 3.66344 3.86241 4.05927 4.14378 4.33240 4.53005 4.66648 4.77058 4.91308 4.99362 5.03158 5.07033 5.18361 5.31817 5.35526 5.44843 5.54682 5.63273 5.69440 6.34256 6.47498 6.71193 7.11960 7.83565 8.35812 9.15431 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.049021 B = 0.015309 C = 0.013743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.049078 B = 1828.535706 C = 2036.897312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.088 3.912 3 N -0.823 5.823 4 C -0.093 4.093 5 C -0.125 4.125 6 C 0.135 3.865 7 N -0.607 5.607 8 C -0.263 4.263 9 H 0.067 0.933 10 C -0.049 4.049 11 N -0.935 5.935 12 Si 0.966 3.034 13 H -0.276 1.276 14 H -0.297 1.297 15 H -0.277 1.277 16 C 0.159 3.841 17 H 0.071 0.929 18 H 0.056 0.944 19 H 0.044 0.956 20 H 0.329 0.671 21 H 0.338 0.662 22 H 0.054 0.946 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.053 0.947 27 H 0.008 0.992 28 H 0.249 0.751 29 H 0.053 0.947 30 H -0.015 1.015 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 2.482 -7.938 8.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.006 4.006 3 N -0.351 5.351 4 C -0.131 4.131 5 C -0.164 4.164 6 C 0.010 3.990 7 N -0.330 5.330 8 C -0.393 4.393 9 H 0.085 0.915 10 C -0.245 4.245 11 N -0.581 5.581 12 Si 0.794 3.206 13 H -0.202 1.202 14 H -0.223 1.223 15 H -0.203 1.203 16 C 0.032 3.968 17 H 0.090 0.910 18 H 0.075 0.925 19 H 0.063 0.937 20 H 0.139 0.861 21 H 0.152 0.848 22 H 0.073 0.927 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.003 0.997 Dipole moment (debyes) X Y Z Total from point charges -1.940 2.531 -8.474 9.054 hybrid contribution 0.825 -0.182 2.107 2.270 sum -1.115 2.349 -6.367 6.877 Atomic orbital electron populations 1.21651 0.93512 1.01440 1.01792 1.21389 0.94914 0.89038 0.95288 1.59324 1.16618 1.13205 1.45979 1.21399 0.95688 0.99166 0.96854 1.21919 0.95960 1.00777 0.97757 1.21138 0.96579 0.94152 0.87159 1.44298 1.01962 1.69920 1.16832 1.19481 0.98144 1.34971 0.86736 0.91548 1.25782 0.99438 1.00313 0.98952 1.70202 1.27255 1.41746 1.18857 0.85360 0.77917 0.79190 0.78087 1.20185 1.22284 1.20301 1.21385 0.83110 0.95933 0.96375 0.90990 0.92455 0.93730 0.86080 0.84816 0.92683 0.90799 0.92075 0.90114 0.92869 0.97352 0.94210 0.92879 0.99686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 8.78 71.98 0.63 -3.46 16 2 C 0.09 3.31 0.95 3.60 0.00 3.31 16 3 N -0.82 -29.97 8.84 -151.25 -1.34 -31.31 16 4 C -0.09 -3.09 4.89 30.62 0.15 -2.94 16 5 C -0.13 -4.17 5.76 30.67 0.18 -3.99 16 6 C 0.13 5.64 6.52 86.36 0.56 6.20 16 7 N -0.61 -30.25 2.58 -699.08 -1.80 -32.06 16 8 C -0.26 -14.36 9.59 84.04 0.81 -13.56 16 9 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 10 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 11 N -0.93 -55.58 11.19 21.65 0.24 -55.33 16 12 Si 0.97 44.81 29.59 68.60 2.03 46.84 16 13 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C 0.16 7.70 4.20 86.36 0.36 8.06 16 17 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 18 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 19 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 20 H 0.33 12.24 9.00 -89.69 -0.81 11.43 16 21 H 0.34 13.02 6.55 -89.69 -0.59 12.44 16 22 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.06 2.07 6.48 -2.39 -0.02 2.05 16 25 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.05 2.90 6.03 -2.39 -0.01 2.89 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 Total: -1.00 -60.14 236.43 1.97 -58.17 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.27 Total: 22.41 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 3.11 Total: -8.71 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -2.90 Total: -118.70 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -60.14 1.97 -58.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885247407.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.952 kcal (2) G-P(sol) polarization free energy of solvation -60.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds