Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47044 * 2 1 4 4 C 1.52998 * 109.47314 * 239.99995 * 2 1 3 5 5 C 1.52999 * 109.47321 * 65.00083 * 4 2 1 6 6 H 1.09001 * 109.46774 * 304.99858 * 5 4 2 7 7 O 1.42897 * 109.47049 * 64.99938 * 5 4 2 8 8 C 1.50698 * 109.46940 * 185.00056 * 5 4 2 9 9 H 1.07997 * 120.00236 * 359.97438 * 8 5 4 10 10 C 1.37886 * 119.99800 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99658 * 180.02562 * 10 8 5 12 12 Si 1.86800 * 119.99930 * 0.02562 * 10 8 5 13 13 H 1.48494 * 109.47366 * 90.00041 * 12 10 8 14 14 H 1.48497 * 109.46829 * 209.99962 * 12 10 8 15 15 H 1.48505 * 109.47166 * 329.99629 * 12 10 8 16 16 C 1.53003 * 109.47133 * 119.99520 * 2 1 3 17 17 C 1.53000 * 117.49792 * 180.02562 * 16 2 1 18 18 C 1.53002 * 60.02940 * 107.48056 * 17 16 2 19 19 H 1.08993 * 109.47346 * 300.00570 * 1 2 3 20 20 H 1.09008 * 109.47014 * 60.00318 * 1 2 3 21 21 H 1.09005 * 109.47044 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47010 * 184.99969 * 4 2 1 23 23 H 1.09001 * 109.47095 * 304.99472 * 4 2 1 24 24 H 0.96700 * 114.00244 * 60.00276 * 7 5 4 25 25 H 0.97000 * 119.99275 * 180.02562 * 11 10 8 26 26 H 1.08999 * 115.54778 * 34.33523 * 16 2 1 27 27 H 1.09002 * 117.49833 * 214.98161 * 17 16 2 28 28 H 1.09002 * 117.49953 * 359.97438 * 17 16 2 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 0.0689 -2.4953 6 1 0.5563 0.2236 -2.4929 7 8 2.2981 1.3349 -2.4926 8 6 2.0295 -0.7019 -3.7288 9 1 2.5200 -1.6593 -3.6335 10 6 1.7639 -0.1847 -4.9791 11 7 2.1075 -0.8577 -6.0555 12 14 0.9162 1.4716 -5.1439 13 1 1.9378 2.5484 -5.1885 14 1 0.1164 1.4960 -6.3949 15 1 0.0202 1.6872 -3.9793 16 6 2.0400 -0.7212 1.2493 17 6 3.5550 -0.8274 1.4347 18 6 2.7420 0.1233 2.3156 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 3.1263 -0.7994 -1.2055 23 1 1.6055 -1.7198 -1.2951 24 1 3.2631 1.2737 -2.4946 25 1 1.9209 -0.4936 -6.9351 26 1 1.4311 -1.5584 1.5903 27 1 3.9430 -1.7347 1.8977 28 1 4.1884 -0.3840 0.6663 29 1 2.5952 -0.1584 3.3583 30 1 2.8403 1.1923 2.1267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535657055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = -48.687220 kcal Electronic energy + Delta-G solvation = -11487.998401 eV Core-core repulsion = 9476.356726 eV Total energy + Delta-G solvation = -2011.641675 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.17529 -36.01479 -32.57471 -32.21839 -28.41338 -25.55863 -23.07186 -22.14904 -20.41401 -19.27756 -17.10207 -15.34731 -14.87518 -14.80058 -14.29747 -13.75024 -12.98939 -12.64970 -12.52086 -11.79997 -11.64001 -11.37884 -11.01840 -10.87502 -10.74839 -10.45115 -10.12229 -9.90146 -9.69530 -9.55563 -9.01221 -8.62102 -8.32363 -6.09602 -4.20103 3.46456 3.49831 3.62868 4.03297 4.52988 4.89845 5.16278 5.17607 5.21188 5.47753 5.67984 5.76877 5.83018 5.95230 5.98691 6.14101 6.28139 6.29400 6.39370 6.46878 6.53209 6.73804 6.81079 7.08163 7.48802 7.65776 8.33249 8.87058 9.05634 9.55010 11.01155 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.062094 B = 0.010908 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.820021 B = 2566.192716 C = 2701.012266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 H 0.072 0.928 4 C -0.123 4.123 5 C 0.186 3.814 6 H 0.062 0.938 7 O -0.589 6.589 8 C -0.560 4.560 9 H 0.072 0.928 10 C 0.078 3.922 11 N -0.896 5.896 12 Si 0.915 3.085 13 H -0.279 1.279 14 H -0.306 1.306 15 H -0.268 1.268 16 C -0.141 4.141 17 C -0.181 4.181 18 C -0.187 4.187 19 H 0.044 0.956 20 H 0.061 0.939 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.060 0.940 24 H 0.359 0.641 25 H 0.264 0.736 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 1.953 12.811 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.081 4.081 3 H 0.090 0.910 4 C -0.161 4.161 5 C 0.130 3.870 6 H 0.080 0.920 7 O -0.395 6.395 8 C -0.597 4.597 9 H 0.090 0.910 10 C -0.126 4.126 11 N -0.533 5.533 12 Si 0.745 3.255 13 H -0.205 1.205 14 H -0.235 1.235 15 H -0.193 1.193 16 C -0.159 4.159 17 C -0.218 4.218 18 C -0.224 4.224 19 H 0.064 0.936 20 H 0.080 0.920 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.079 0.921 24 H 0.205 0.795 25 H 0.074 0.926 26 H 0.115 0.885 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.927 2.153 12.636 12.852 hybrid contribution 0.212 0.420 -0.215 0.517 sum -0.715 2.573 12.422 12.705 Atomic orbital electron populations 1.21819 0.95599 1.01346 1.01247 1.20769 0.95395 0.99228 0.92698 0.90962 1.22140 1.00289 0.99465 0.94232 1.20021 0.93673 0.81156 0.92199 0.92044 1.86356 1.22488 1.34038 1.96625 1.21649 1.41199 1.06911 0.89936 0.90977 1.25075 0.94148 0.97722 0.95623 1.69974 1.46684 1.38638 0.98041 0.86224 0.79664 0.83752 0.75852 1.20534 1.23462 1.19333 1.22454 0.94462 1.01297 0.97673 1.22904 0.94686 1.01226 1.02954 1.22998 1.05907 0.97625 0.95881 0.93645 0.92027 0.93070 0.92634 0.92144 0.79459 0.92640 0.88458 0.89408 0.88629 0.89577 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.94 37.16 0.33 -1.94 16 2 C -0.06 -1.04 2.49 -90.62 -0.23 -1.26 16 3 H 0.07 1.26 7.45 -51.93 -0.39 0.87 16 4 C -0.12 -2.42 4.21 -26.73 -0.11 -2.54 16 5 C 0.19 4.40 2.17 -27.88 -0.06 4.34 16 6 H 0.06 1.52 5.40 -51.93 -0.28 1.24 16 7 O -0.59 -13.51 10.49 -35.23 -0.37 -13.88 16 8 C -0.56 -15.81 9.34 -34.44 -0.32 -16.13 16 9 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 10 C 0.08 2.29 5.47 -17.82 -0.10 2.20 16 11 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 12 Si 0.92 23.65 26.18 -169.99 -4.45 19.20 16 13 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.31 -7.84 7.11 56.52 0.40 -7.44 16 15 H -0.27 -6.85 6.54 56.52 0.37 -6.48 16 16 C -0.14 -1.99 5.15 -90.58 -0.47 -2.46 16 17 C -0.18 -2.39 9.67 -26.73 -0.26 -2.65 16 18 C -0.19 -2.33 10.18 -26.69 -0.27 -2.60 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.06 1.08 6.46 -51.92 -0.34 0.74 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 1.07 7.13 -51.93 -0.37 0.70 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.36 7.29 9.04 45.56 0.41 7.70 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 26 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.10 1.32 7.59 -51.93 -0.39 0.93 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.13 8.05 -51.93 -0.42 0.72 16 LS Contribution 245.24 15.07 3.70 3.70 Total: -1.00 -30.56 245.24 -5.73 -36.28 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.89 Total: 4.64 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -1.48 Total: -23.03 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.37 Total: -13.88 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.45 Total: 19.20 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.56 -5.73 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.402 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds