Wall clock time and date at job start Mon Mar 30 2020 01:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47044 * 2 1 4 4 C 1.52998 * 109.47314 * 239.99995 * 2 1 3 5 5 C 1.52999 * 109.47321 * 65.00083 * 4 2 1 6 6 H 1.09001 * 109.46774 * 304.99858 * 5 4 2 7 7 O 1.42897 * 109.47049 * 64.99938 * 5 4 2 8 8 C 1.50698 * 109.46940 * 185.00056 * 5 4 2 9 9 H 1.07997 * 120.00236 * 359.97438 * 8 5 4 10 10 C 1.37886 * 119.99800 * 179.97438 * 8 5 4 11 11 N 1.31515 * 119.99658 * 180.02562 * 10 8 5 12 12 Si 1.86800 * 119.99930 * 0.02562 * 10 8 5 13 13 H 1.48494 * 109.47366 * 90.00041 * 12 10 8 14 14 H 1.48497 * 109.46829 * 209.99962 * 12 10 8 15 15 H 1.48505 * 109.47166 * 329.99629 * 12 10 8 16 16 C 1.53003 * 109.47133 * 119.99520 * 2 1 3 17 17 C 1.53000 * 117.49792 * 180.02562 * 16 2 1 18 18 C 1.53002 * 60.02940 * 107.48056 * 17 16 2 19 19 H 1.08993 * 109.47346 * 300.00570 * 1 2 3 20 20 H 1.09008 * 109.47014 * 60.00318 * 1 2 3 21 21 H 1.09005 * 109.47044 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47010 * 184.99969 * 4 2 1 23 23 H 1.09001 * 109.47095 * 304.99472 * 4 2 1 24 24 H 0.96700 * 114.00244 * 60.00276 * 7 5 4 25 25 H 0.97000 * 119.99275 * 180.02562 * 11 10 8 26 26 H 1.08999 * 115.54778 * 34.33523 * 16 2 1 27 27 H 1.09002 * 117.49833 * 214.98161 * 17 16 2 28 28 H 1.09002 * 117.49953 * 359.97438 * 17 16 2 29 29 H 1.09000 * 117.49996 * 107.50493 * 18 17 16 30 30 H 1.08999 * 117.49664 * 252.51862 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6353 0.0689 -2.4953 6 1 0.5563 0.2236 -2.4929 7 8 2.2981 1.3349 -2.4926 8 6 2.0295 -0.7019 -3.7288 9 1 2.5200 -1.6593 -3.6335 10 6 1.7639 -0.1847 -4.9791 11 7 2.1075 -0.8577 -6.0555 12 14 0.9162 1.4716 -5.1439 13 1 1.9378 2.5484 -5.1885 14 1 0.1164 1.4960 -6.3949 15 1 0.0202 1.6872 -3.9793 16 6 2.0400 -0.7212 1.2493 17 6 3.5550 -0.8274 1.4347 18 6 2.7420 0.1233 2.3156 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 3.1263 -0.7994 -1.2055 23 1 1.6055 -1.7198 -1.2951 24 1 3.2631 1.2737 -2.4946 25 1 1.9209 -0.4936 -6.9351 26 1 1.4311 -1.5584 1.5903 27 1 3.9430 -1.7347 1.8977 28 1 4.1884 -0.3840 0.6663 29 1 2.5952 -0.1584 3.3583 30 1 2.8403 1.1923 2.1267 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535657055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:18 Heat of formation + Delta-G solvation = -69.302949 kcal Electronic energy + Delta-G solvation = -11488.892366 eV Core-core repulsion = 9476.356726 eV Total energy + Delta-G solvation = -2012.535640 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.51809 -37.64824 -34.45100 -33.97494 -30.21611 -27.32019 -24.56987 -23.17344 -22.04992 -20.67791 -19.16742 -16.88655 -16.55029 -16.46155 -15.86736 -15.36140 -14.87322 -14.27887 -13.90473 -13.60790 -13.13419 -12.81651 -12.79353 -12.36566 -12.22597 -11.93434 -11.68268 -11.52752 -11.06806 -10.95364 -10.87988 -10.79690 -10.16180 -8.36933 -6.50861 1.39086 1.42095 1.56971 2.37183 2.97710 2.98590 3.77088 3.99382 4.05880 4.14233 4.23597 4.52372 4.54206 4.70863 4.77954 4.84814 4.94157 5.07612 5.11178 5.25583 5.29940 5.33554 5.38105 5.56362 5.58547 5.72713 6.09670 6.62406 7.16019 7.32363 8.77633 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.062094 B = 0.010908 C = 0.010364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.820021 B = 2566.192716 C = 2701.012266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 H 0.065 0.935 4 C -0.114 4.114 5 C 0.193 3.807 6 H 0.056 0.944 7 O -0.589 6.589 8 C -0.564 4.564 9 H 0.037 0.963 10 C 0.025 3.975 11 N -0.940 5.940 12 Si 0.976 3.024 13 H -0.275 1.275 14 H -0.302 1.302 15 H -0.261 1.261 16 C -0.154 4.154 17 C -0.186 4.186 18 C -0.170 4.170 19 H 0.068 0.932 20 H 0.040 0.960 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.372 0.628 25 H 0.268 0.732 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 3.001 14.685 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 H 0.084 0.916 4 C -0.152 4.152 5 C 0.135 3.865 6 H 0.074 0.926 7 O -0.397 6.397 8 C -0.602 4.602 9 H 0.055 0.945 10 C -0.174 4.174 11 N -0.580 5.580 12 Si 0.804 3.196 13 H -0.200 1.200 14 H -0.230 1.230 15 H -0.186 1.186 16 C -0.172 4.172 17 C -0.223 4.223 18 C -0.206 4.206 19 H 0.087 0.913 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.220 0.780 25 H 0.076 0.924 26 H 0.125 0.875 27 H 0.120 0.880 28 H 0.103 0.897 29 H 0.126 0.874 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.311 3.202 14.526 14.932 hybrid contribution 0.392 0.034 -0.789 0.882 sum -0.919 3.235 13.736 14.142 Atomic orbital electron populations 1.21811 0.95007 1.01784 1.01358 1.20636 0.95882 0.98567 0.92248 0.91615 1.21979 1.00286 0.98733 0.94183 1.19854 0.93377 0.81274 0.91950 0.92635 1.86287 1.23647 1.33172 1.96571 1.22012 1.40141 1.06019 0.91983 0.94485 1.25897 0.94966 1.01167 0.95402 1.70087 1.48563 1.40588 0.98726 0.85256 0.78804 0.79525 0.76056 1.20024 1.23022 1.18585 1.22366 0.95188 1.02227 0.97423 1.22969 0.93896 1.02248 1.03213 1.23070 1.03721 0.97385 0.96463 0.91340 0.94044 0.92530 0.92679 0.92991 0.78043 0.92362 0.87536 0.88012 0.89711 0.87415 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 8.94 71.98 0.64 -3.59 16 2 C -0.05 -1.72 2.49 -10.79 -0.03 -1.74 16 3 H 0.07 2.15 7.45 -2.38 -0.02 2.13 16 4 C -0.11 -4.39 4.21 30.59 0.13 -4.26 16 5 C 0.19 9.00 2.17 29.85 0.06 9.06 16 6 H 0.06 2.69 5.40 -2.39 -0.01 2.68 16 7 O -0.59 -26.11 10.49 -148.98 -1.56 -27.67 16 8 C -0.56 -32.29 9.34 25.60 0.24 -32.05 16 9 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 10 C 0.03 1.49 5.47 84.66 0.46 1.95 16 11 N -0.94 -59.09 13.96 21.45 0.30 -58.79 16 12 Si 0.98 48.49 26.18 68.60 1.80 50.29 16 13 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 15 H -0.26 -12.59 6.54 99.48 0.65 -11.94 16 16 C -0.15 -3.96 5.15 -10.77 -0.06 -4.01 16 17 C -0.19 -4.48 9.67 30.60 0.30 -4.18 16 18 C -0.17 -3.65 10.18 30.62 0.31 -3.34 16 19 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 20 H 0.04 1.38 6.46 -2.38 -0.02 1.37 16 21 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.05 2.10 7.13 -2.39 -0.02 2.08 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.37 14.56 9.04 -74.06 -0.67 13.89 16 25 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 26 H 0.11 2.56 8.11 -2.39 -0.02 2.54 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.08 2.21 7.59 -2.39 -0.02 2.20 16 29 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.09 1.99 8.05 -2.39 -0.02 1.97 16 Total: -1.00 -64.51 245.24 2.98 -61.53 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.38 Total: 16.81 kcal Atomic # 6 Polarization: -44.23 SS G_CDS: 2.06 Total: -42.16 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.30 Total: -58.79 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.56 Total: -27.67 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.80 Total: 50.29 kcal Total: -64.51 2.98 -61.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.773 kcal (2) G-P(sol) polarization free energy of solvation -64.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds