Wall clock time and date at job start Mon Mar 30 2020 01:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47010 * 2 1 4 4 C 1.52998 * 109.47481 * 120.00497 * 2 1 3 5 5 C 1.52998 * 109.46845 * 185.51198 * 4 2 1 6 6 H 1.09005 * 109.47275 * 303.89469 * 5 4 2 7 7 O 1.42904 * 109.47513 * 63.89692 * 5 4 2 8 8 C 1.50708 * 109.47001 * 183.89859 * 5 4 2 9 9 H 1.07997 * 119.99671 * 359.97438 * 8 5 4 10 10 C 1.37874 * 119.99929 * 180.02562 * 8 5 4 11 11 N 1.31515 * 120.00217 * 359.97438 * 10 8 5 12 12 Si 1.86801 * 119.99753 * 179.97438 * 10 8 5 13 13 H 1.48493 * 109.47271 * 59.99836 * 12 10 8 14 14 H 1.48504 * 109.47043 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47003 * 299.99645 * 12 10 8 16 16 C 1.53008 * 109.46827 * 240.00643 * 2 1 3 17 17 C 1.52996 * 117.50039 * 128.74434 * 16 2 1 18 18 C 1.52998 * 117.49980 * 60.08292 * 16 2 1 19 19 H 1.08999 * 109.47760 * 54.97673 * 1 2 3 20 20 H 1.09003 * 109.47008 * 294.96860 * 1 2 3 21 21 H 1.09004 * 109.47088 * 174.97781 * 1 2 3 22 22 H 1.08997 * 109.47055 * 305.51041 * 4 2 1 23 23 H 1.09000 * 109.47329 * 65.51407 * 4 2 1 24 24 H 0.96697 * 113.99632 * 60.00009 * 7 5 4 25 25 H 0.96998 * 120.00037 * 180.02562 * 11 10 8 26 26 H 1.09006 * 115.54659 * 274.40998 * 16 2 1 27 27 H 1.09004 * 117.49681 * 359.97438 * 17 16 2 28 28 H 1.08999 * 117.49950 * 145.01960 * 17 16 2 29 29 H 1.09001 * 117.49477 * 214.97944 * 18 16 2 30 30 H 1.08999 * 117.49860 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5637 -0.6024 1.3202 6 1 4.0020 -0.9934 0.4019 7 8 3.9277 0.7709 1.4745 8 6 4.0750 -1.3929 2.4971 9 1 3.3823 -1.9263 3.1311 10 6 5.4268 -1.4342 2.7649 11 7 6.2703 -0.7841 1.9931 12 14 6.0604 -2.4134 4.2240 13 1 5.6826 -3.8406 4.0640 14 1 7.5393 -2.2981 4.2930 15 1 5.4630 -1.8805 5.4748 16 6 2.0399 -0.7212 -1.2494 17 6 3.0761 0.0041 -2.1103 18 6 1.6372 -0.1482 -2.6097 19 1 -0.3634 0.5898 -0.8415 20 1 -0.3633 0.4338 0.9316 21 1 -0.3633 -1.0238 -0.0900 22 1 1.5984 -0.2677 2.1364 23 1 1.7596 -1.7736 1.2011 24 1 3.5717 1.1848 2.2726 25 1 7.2214 -0.8135 2.1813 26 1 2.1253 -1.8046 -1.1649 27 1 3.3943 0.9952 -1.7867 28 1 3.8430 -0.6022 -2.5925 29 1 1.4580 -0.8546 -3.4202 30 1 1.0086 0.7423 -2.6146 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535657056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:21 Heat of formation + Delta-G solvation = -51.110594 kcal Electronic energy + Delta-G solvation = -11521.594380 eV Core-core repulsion = 9509.847620 eV Total energy + Delta-G solvation = -2011.746760 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.95512 -35.43908 -32.38010 -31.98908 -28.32736 -25.22430 -22.68916 -21.78037 -20.72819 -19.05202 -16.75842 -15.07809 -14.71797 -14.52008 -14.14554 -13.16097 -13.07157 -12.58681 -12.36404 -11.57984 -11.19756 -11.07656 -10.92831 -10.80493 -10.75453 -10.50105 -10.05948 -9.81312 -9.57184 -9.38677 -8.80295 -8.47694 -7.97340 -5.92885 -4.10390 3.32140 3.37282 3.39268 4.32859 4.44299 5.13576 5.33741 5.42262 5.43928 5.60885 5.83246 5.96393 6.00151 6.14929 6.24432 6.36108 6.41902 6.50815 6.58182 6.63099 6.78184 6.83466 7.05183 7.21561 7.84272 7.99195 8.30391 8.93323 9.49135 9.67822 11.10998 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.058022 B = 0.010824 C = 0.010054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.461427 B = 2586.317488 C = 2784.381483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 H 0.072 0.928 4 C -0.135 4.135 5 C 0.229 3.771 6 H 0.060 0.940 7 O -0.566 6.566 8 C -0.573 4.573 9 H 0.053 0.947 10 C 0.078 3.922 11 N -0.861 5.861 12 Si 0.886 3.114 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.131 4.131 17 C -0.169 4.169 18 C -0.194 4.194 19 H 0.045 0.955 20 H 0.048 0.952 21 H 0.049 0.951 22 H 0.048 0.952 23 H 0.053 0.947 24 H 0.341 0.659 25 H 0.259 0.741 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 1.004 -4.526 9.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 H 0.090 0.910 4 C -0.173 4.173 5 C 0.172 3.828 6 H 0.077 0.923 7 O -0.368 6.368 8 C -0.611 4.611 9 H 0.071 0.929 10 C -0.127 4.127 11 N -0.497 5.497 12 Si 0.713 3.287 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.149 4.149 17 C -0.206 4.206 18 C -0.231 4.231 19 H 0.064 0.936 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.184 0.816 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.550 0.926 -5.150 9.186 hybrid contribution 0.157 -0.620 1.363 1.506 sum -7.393 0.306 -3.786 8.312 Atomic orbital electron populations 1.21813 0.96486 1.01036 1.00523 1.20750 0.93674 0.99710 0.93771 0.91002 1.22377 1.00924 0.99044 0.94927 1.19379 0.86634 0.79968 0.96836 0.92274 1.86549 1.78148 1.27028 1.45112 1.21745 0.92413 1.32871 1.14030 0.92924 1.25047 0.97084 0.94582 0.96023 1.70071 1.02391 1.39988 1.37216 0.86795 0.77725 0.80745 0.83430 1.20245 1.21250 1.20232 1.22265 1.02863 0.98949 0.90827 1.22926 0.91484 1.02519 1.03648 1.22939 0.99089 1.03048 0.98034 0.93589 0.93241 0.93220 0.93347 0.92807 0.81584 0.93099 0.88420 0.88638 0.89436 0.89764 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.96 37.16 0.33 -1.75 16 2 C -0.06 -1.08 2.48 -90.62 -0.23 -1.30 16 3 H 0.07 1.37 7.40 -51.93 -0.38 0.98 16 4 C -0.13 -2.80 4.28 -26.73 -0.11 -2.91 16 5 C 0.23 5.85 2.72 -27.88 -0.08 5.78 16 6 H 0.06 1.66 7.18 -51.93 -0.37 1.29 16 7 O -0.57 -14.70 12.13 -35.23 -0.43 -15.13 16 8 C -0.57 -16.08 8.76 -34.44 -0.30 -16.38 16 9 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 10 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 11 N -0.86 -25.90 12.84 55.43 0.71 -25.19 16 12 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C -0.13 -2.26 4.12 -90.62 -0.37 -2.64 16 17 C -0.17 -2.89 10.08 -26.70 -0.27 -3.16 16 18 C -0.19 -2.83 9.80 -26.69 -0.26 -3.09 16 19 H 0.05 0.61 7.48 -51.93 -0.39 0.22 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 24 H 0.34 7.93 9.04 45.56 0.41 8.34 16 25 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.10 1.73 8.11 -51.93 -0.42 1.31 16 27 H 0.10 1.73 8.05 -51.93 -0.42 1.31 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.19 7.67 -51.93 -0.40 0.79 16 LS Contribution 252.26 15.07 3.80 3.80 Total: -1.00 -30.05 252.26 -6.37 -36.42 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.05 Total: 6.88 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: -1.38 Total: -23.31 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.71 Total: -25.19 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.43 Total: -15.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.05 -6.37 -36.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.690 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds