Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53005 * 109.47264 * 295.00560 * 4 2 1 6 6 H 1.09003 * 109.47079 * 54.99495 * 5 4 2 7 7 O 1.42904 * 109.46580 * 294.99456 * 5 4 2 8 8 C 1.50704 * 109.46943 * 174.99758 * 5 4 2 9 9 H 1.07995 * 120.00488 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99441 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00253 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99663 * 179.97438 * 10 8 5 13 13 H 1.48508 * 109.47168 * 89.99911 * 12 10 8 14 14 H 1.48502 * 109.47075 * 209.99918 * 12 10 8 15 15 H 1.48501 * 109.47337 * 330.00152 * 12 10 8 16 16 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 17 17 C 1.53009 * 117.50103 * 128.74475 * 16 2 1 18 18 C 1.53005 * 117.50008 * 60.08627 * 16 2 1 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 23 23 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 24 24 H 0.96701 * 114.00083 * 299.99964 * 7 5 4 25 25 H 0.97004 * 120.00037 * 180.02562 * 11 10 8 26 26 H 1.09002 * 115.55450 * 274.41732 * 16 2 1 27 27 H 1.09000 * 117.49878 * 0.02562 * 17 16 2 28 28 H 1.08997 * 117.49785 * 145.02207 * 17 16 2 29 29 H 1.08992 * 117.50188 * 214.98232 * 18 16 2 30 30 H 1.09002 * 117.49714 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0690 2.4954 6 1 0.5562 0.2237 2.4928 7 8 2.2980 1.3350 2.4926 8 6 2.0293 -0.7018 3.7289 9 1 2.5191 -1.6595 3.6338 10 6 1.7645 -0.1840 4.9791 11 7 1.1676 0.9820 5.0951 12 14 2.2524 -1.1397 6.5082 13 1 3.6285 -0.7560 6.9137 14 1 1.3066 -0.8276 7.6097 15 1 2.2100 -2.5952 6.2168 16 6 2.0400 -0.7212 -1.2491 17 6 3.0764 0.0040 -2.1100 18 6 1.6375 -0.1484 -2.6096 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.6054 -1.7198 1.2952 23 1 3.1263 -0.7995 1.2057 24 1 3.2631 1.2737 2.4946 25 1 0.9817 1.3464 5.9746 26 1 2.1254 -1.8046 -1.1646 27 1 3.3951 0.9948 -1.7862 28 1 3.8432 -0.6023 -2.5921 29 1 1.4583 -0.8548 -3.4200 30 1 1.0096 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535657057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = -51.133806 kcal Electronic energy + Delta-G solvation = -11381.905589 eV Core-core repulsion = 9370.157822 eV Total energy + Delta-G solvation = -2011.747767 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.00887 -35.70962 -32.36452 -32.00747 -27.95562 -25.40988 -23.20651 -22.05005 -20.28207 -19.18198 -16.85660 -15.21536 -14.72949 -14.47824 -14.06970 -13.81222 -12.79185 -12.53266 -12.42519 -11.60283 -11.36696 -11.13605 -10.90810 -10.90053 -10.54090 -10.33076 -10.19553 -10.07090 -9.68805 -9.46128 -8.82723 -8.49898 -7.99866 -5.94918 -4.12266 3.30276 3.37160 3.40179 4.08187 4.43144 4.97267 5.22076 5.23116 5.31893 5.60833 5.79817 5.87287 5.95892 6.02105 6.17232 6.31274 6.32349 6.45533 6.55210 6.65222 6.75950 6.88549 7.03004 7.21043 7.82550 7.94970 8.28031 8.91435 9.46570 9.65542 11.09198 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.075206 B = 0.009168 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.222543 B = 3053.457966 C = 3120.665764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 H 0.071 0.929 4 C -0.133 4.133 5 C 0.225 3.775 6 H 0.059 0.941 7 O -0.568 6.568 8 C -0.571 4.571 9 H 0.054 0.946 10 C 0.077 3.923 11 N -0.862 5.862 12 Si 0.887 3.113 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.274 1.274 16 C -0.139 4.139 17 C -0.184 4.184 18 C -0.186 4.186 19 H 0.047 0.953 20 H 0.042 0.958 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.048 0.952 24 H 0.343 0.657 25 H 0.259 0.741 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -2.333 -10.220 10.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 H 0.090 0.910 4 C -0.171 4.171 5 C 0.168 3.832 6 H 0.076 0.924 7 O -0.370 6.370 8 C -0.609 4.609 9 H 0.072 0.928 10 C -0.128 4.128 11 N -0.498 5.498 12 Si 0.714 3.286 13 H -0.206 1.206 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.157 4.157 17 C -0.221 4.221 18 C -0.223 4.223 19 H 0.066 0.934 20 H 0.061 0.939 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.186 0.814 25 H 0.069 0.931 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.625 -1.979 -10.102 10.313 hybrid contribution 0.851 -0.859 0.891 1.502 sum 1.475 -2.838 -9.211 9.750 Atomic orbital electron populations 1.21807 0.95660 1.01149 1.01244 1.20732 0.95310 0.99288 0.92443 0.91015 1.22341 0.99708 0.99449 0.95610 1.19458 0.93723 0.80869 0.89152 0.92360 1.86541 1.20573 1.32855 1.97028 1.21756 1.41605 1.05766 0.91753 0.92772 1.25061 0.94178 0.94577 0.99021 1.70078 1.39608 1.16806 1.23288 0.86711 0.78428 0.80450 0.82996 1.20590 1.21152 1.19888 1.22498 1.02458 0.98977 0.91786 1.22983 0.92147 1.02226 1.04758 1.22906 0.98174 1.03325 0.97928 0.93362 0.93897 0.91724 0.92771 0.93303 0.81384 0.93103 0.88456 0.88904 0.89532 0.89565 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 8.80 37.16 0.33 -2.11 16 2 C -0.06 -1.06 2.49 -90.63 -0.23 -1.28 16 3 H 0.07 1.37 7.45 -51.93 -0.39 0.98 16 4 C -0.13 -2.76 4.28 -26.73 -0.11 -2.88 16 5 C 0.23 5.76 2.69 -27.88 -0.07 5.69 16 6 H 0.06 1.63 6.34 -51.93 -0.33 1.30 16 7 O -0.57 -14.81 12.18 -35.23 -0.43 -15.24 16 8 C -0.57 -16.01 8.76 -34.44 -0.30 -16.31 16 9 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 10 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 11 N -0.86 -25.92 12.84 55.43 0.71 -25.20 16 12 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 C -0.14 -2.09 5.15 -90.62 -0.47 -2.56 16 17 C -0.18 -2.46 10.18 -26.69 -0.27 -2.73 16 18 C -0.19 -2.41 9.74 -26.69 -0.26 -2.67 16 19 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 20 H 0.04 0.65 7.29 -51.93 -0.38 0.27 16 21 H 0.06 1.25 6.46 -51.93 -0.34 0.91 16 22 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.34 8.00 9.04 45.56 0.41 8.41 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.10 1.44 8.11 -51.93 -0.42 1.02 16 27 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.17 7.61 -51.93 -0.40 0.78 16 LS Contribution 250.49 15.07 3.77 3.77 Total: -1.00 -30.06 250.49 -6.36 -36.41 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -3.91 Total: 6.51 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.48 Total: -22.74 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.71 Total: -25.20 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.43 Total: -15.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.06 -6.36 -36.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.720 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds