Wall clock time and date at job start Mon Mar 30 2020 01:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53005 * 109.47264 * 295.00560 * 4 2 1 6 6 H 1.09003 * 109.47079 * 54.99495 * 5 4 2 7 7 O 1.42904 * 109.46580 * 294.99456 * 5 4 2 8 8 C 1.50704 * 109.46943 * 174.99758 * 5 4 2 9 9 H 1.07995 * 120.00488 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99441 * 179.97438 * 8 5 4 11 11 N 1.31510 * 120.00253 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99663 * 179.97438 * 10 8 5 13 13 H 1.48508 * 109.47168 * 89.99911 * 12 10 8 14 14 H 1.48502 * 109.47075 * 209.99918 * 12 10 8 15 15 H 1.48501 * 109.47337 * 330.00152 * 12 10 8 16 16 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 17 17 C 1.53009 * 117.50103 * 128.74475 * 16 2 1 18 18 C 1.53005 * 117.50008 * 60.08627 * 16 2 1 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 22 22 H 1.09006 * 109.47194 * 55.00274 * 4 2 1 23 23 H 1.08997 * 109.47756 * 174.99755 * 4 2 1 24 24 H 0.96701 * 114.00083 * 299.99964 * 7 5 4 25 25 H 0.97004 * 120.00037 * 180.02562 * 11 10 8 26 26 H 1.09002 * 115.55450 * 274.41732 * 16 2 1 27 27 H 1.09000 * 117.49878 * 0.02562 * 17 16 2 28 28 H 1.08997 * 117.49785 * 145.02207 * 17 16 2 29 29 H 1.08992 * 117.50188 * 214.98232 * 18 16 2 30 30 H 1.09002 * 117.49714 * 0.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0690 2.4954 6 1 0.5562 0.2237 2.4928 7 8 2.2980 1.3350 2.4926 8 6 2.0293 -0.7018 3.7289 9 1 2.5191 -1.6595 3.6338 10 6 1.7645 -0.1840 4.9791 11 7 1.1676 0.9820 5.0951 12 14 2.2524 -1.1397 6.5082 13 1 3.6285 -0.7560 6.9137 14 1 1.3066 -0.8276 7.6097 15 1 2.2100 -2.5952 6.2168 16 6 2.0400 -0.7212 -1.2491 17 6 3.0764 0.0040 -2.1100 18 6 1.6375 -0.1484 -2.6096 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.6054 -1.7198 1.2952 23 1 3.1263 -0.7995 1.2057 24 1 3.2631 1.2737 2.4946 25 1 0.9817 1.3464 5.9746 26 1 2.1254 -1.8046 -1.1646 27 1 3.3951 0.9948 -1.7862 28 1 3.8432 -0.6023 -2.5921 29 1 1.4583 -0.8548 -3.4200 30 1 1.0096 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535657057.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:23 Heat of formation + Delta-G solvation = -70.703000 kcal Electronic energy + Delta-G solvation = -11382.754173 eV Core-core repulsion = 9370.157822 eV Total energy + Delta-G solvation = -2012.596351 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.38363 -37.49696 -34.27197 -33.83921 -29.81849 -27.21608 -24.87040 -23.06872 -21.99627 -20.60780 -18.92976 -16.67620 -16.54371 -16.29163 -15.78032 -15.43264 -14.38675 -14.25696 -13.98262 -13.15403 -13.08391 -12.88167 -12.78605 -12.33751 -12.16283 -11.89426 -11.75236 -11.62401 -11.10730 -10.84143 -10.73735 -10.60338 -9.99997 -8.12013 -6.37617 1.39561 1.39983 1.51133 2.39443 3.00139 3.13032 3.77599 4.06873 4.13321 4.24573 4.35352 4.49427 4.57118 4.78003 4.83439 4.85565 5.02939 5.06601 5.14404 5.28832 5.33206 5.35151 5.43475 5.60833 5.67962 5.90019 6.14166 6.75417 7.34815 7.58482 8.92081 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.075206 B = 0.009168 C = 0.008970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 372.222543 B = 3053.457966 C = 3120.665764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.052 4.052 3 H 0.055 0.945 4 C -0.119 4.119 5 C 0.223 3.777 6 H 0.028 0.972 7 O -0.582 6.582 8 C -0.588 4.588 9 H 0.057 0.943 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.959 3.041 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.265 1.265 16 C -0.157 4.157 17 C -0.180 4.180 18 C -0.171 4.171 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.033 0.967 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.354 0.646 25 H 0.261 0.739 26 H 0.103 0.897 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.017 -3.403 -11.150 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.071 4.071 3 H 0.074 0.926 4 C -0.157 4.157 5 C 0.166 3.834 6 H 0.045 0.955 7 O -0.386 6.386 8 C -0.626 4.626 9 H 0.075 0.925 10 C -0.180 4.180 11 N -0.539 5.539 12 Si 0.783 3.217 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.190 1.190 16 C -0.175 4.175 17 C -0.217 4.217 18 C -0.207 4.207 19 H 0.074 0.926 20 H 0.084 0.916 21 H 0.052 0.948 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.198 0.802 25 H 0.069 0.931 26 H 0.121 0.879 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.126 0.874 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.307 -3.059 -11.044 11.534 hybrid contribution 0.634 -0.495 1.153 1.406 sum 1.941 -3.554 -9.892 10.689 Atomic orbital electron populations 1.21767 0.95439 1.01516 1.00809 1.20574 0.95500 0.98304 0.92686 0.92627 1.22108 0.99897 0.98832 0.94861 1.19375 0.92130 0.80991 0.90935 0.95468 1.86483 1.21548 1.33380 1.97195 1.22177 1.41347 1.06050 0.93027 0.92520 1.25942 0.94052 0.95493 1.02486 1.70218 1.40974 1.18608 1.24113 0.85579 0.78213 0.79201 0.78702 1.19778 1.20811 1.18960 1.22320 1.04743 0.99018 0.91391 1.23069 0.92866 1.01918 1.03880 1.22997 0.97673 1.03342 0.96725 0.92578 0.91587 0.94834 0.92727 0.92910 0.80192 0.93057 0.87933 0.89489 0.87688 0.87377 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 8.80 71.98 0.63 -4.08 16 2 C -0.05 -1.83 2.49 -10.80 -0.03 -1.86 16 3 H 0.06 2.12 7.45 -2.39 -0.02 2.10 16 4 C -0.12 -4.93 4.28 30.60 0.13 -4.80 16 5 C 0.22 11.64 2.69 29.85 0.08 11.72 16 6 H 0.03 1.59 6.34 -2.39 -0.02 1.58 16 7 O -0.58 -31.02 12.18 -148.98 -1.82 -32.83 16 8 C -0.59 -33.20 8.76 25.60 0.22 -32.98 16 9 H 0.06 3.09 7.74 -2.91 -0.02 3.07 16 10 C 0.02 1.27 5.40 84.66 0.46 1.73 16 11 N -0.90 -55.12 12.84 21.45 0.28 -54.84 16 12 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 16 C -0.16 -4.36 5.15 -10.79 -0.06 -4.42 16 17 C -0.18 -4.34 10.18 30.62 0.31 -4.02 16 18 C -0.17 -3.87 9.74 30.62 0.30 -3.57 16 19 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 20 H 0.07 1.91 7.29 -2.39 -0.02 1.89 16 21 H 0.03 1.33 6.46 -2.38 -0.02 1.31 16 22 H 0.05 2.23 8.14 -2.38 -0.02 2.21 16 23 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.35 16.72 9.04 -74.06 -0.67 16.05 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.10 2.77 8.11 -2.39 -0.02 2.75 16 27 H 0.09 2.19 8.05 -2.39 -0.02 2.17 16 28 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 30 H 0.09 2.09 7.61 -2.39 -0.02 2.07 16 Total: -1.00 -63.84 250.49 2.98 -60.86 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.44 Total: 22.93 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 2.05 Total: -42.27 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.28 Total: -54.84 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.82 Total: -32.83 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -63.84 2.98 -60.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657057.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.843 kcal (2) G-P(sol) polarization free energy of solvation -63.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds