Wall clock time and date at job start Mon Mar 30 2020 01:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47614 * 2 1 4 4 C 1.52997 * 109.47325 * 239.99422 * 2 1 3 5 5 C 1.53001 * 109.47039 * 66.45724 * 4 2 1 6 6 H 1.09007 * 109.46789 * 53.70966 * 5 4 2 7 7 O 1.42900 * 109.47578 * 293.71282 * 5 4 2 8 8 C 1.50694 * 109.47308 * 173.70605 * 5 4 2 9 9 H 1.07999 * 120.00155 * 0.02562 * 8 5 4 10 10 C 1.37878 * 119.99902 * 180.02562 * 8 5 4 11 11 N 1.31510 * 120.00326 * 0.02562 * 10 8 5 12 12 Si 1.86810 * 119.99938 * 180.02562 * 10 8 5 13 13 H 1.48494 * 109.47108 * 59.99851 * 12 10 8 14 14 H 1.48490 * 109.46975 * 180.02562 * 12 10 8 15 15 H 1.48509 * 109.46785 * 300.00146 * 12 10 8 16 16 C 1.53007 * 109.46968 * 119.99725 * 2 1 3 17 17 C 1.52995 * 117.50161 * 248.62310 * 16 2 1 18 18 C 1.52992 * 117.49911 * 179.97438 * 16 2 1 19 19 H 1.09000 * 109.47241 * 171.68321 * 1 2 3 20 20 H 1.09002 * 109.47078 * 291.67848 * 1 2 3 21 21 H 1.08999 * 109.46993 * 51.68095 * 1 2 3 22 22 H 1.09004 * 109.47421 * 306.46602 * 4 2 1 23 23 H 1.08996 * 109.47717 * 186.45961 * 4 2 1 24 24 H 0.96706 * 113.99604 * 299.99968 * 7 5 4 25 25 H 0.97002 * 120.00157 * 179.97438 * 11 10 8 26 26 H 1.09010 * 115.54789 * 34.32925 * 16 2 1 27 27 H 1.09002 * 117.49400 * 359.97438 * 17 16 2 28 28 H 1.08993 * 117.50483 * 145.01570 * 17 16 2 29 29 H 1.09003 * 117.50445 * 214.97836 * 18 16 2 30 30 H 1.09000 * 117.50138 * 359.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6668 0.0873 -2.4932 6 1 2.0267 1.1104 -2.3829 7 8 0.2462 0.0962 -2.6472 8 6 2.3000 -0.5395 -3.7085 9 1 2.9075 -1.4263 -3.6041 10 6 2.1038 0.0191 -4.9537 11 7 1.3644 1.0992 -5.0807 12 14 2.8881 -0.7585 -6.4603 13 1 2.3970 -2.1518 -6.6107 14 1 2.5270 0.0272 -7.6675 15 1 4.3645 -0.7686 -6.3002 16 6 2.0400 -0.7212 1.2493 17 6 2.7418 0.1226 2.3152 18 6 3.5549 -0.8286 1.4341 19 1 -0.3634 -1.0168 -0.1486 20 1 -0.3633 0.3796 0.9550 21 1 -0.3633 0.6372 -0.8063 22 1 1.5853 -1.7102 -1.3088 23 1 3.1238 -0.8226 -1.1933 24 1 -0.1437 -0.7828 -2.7507 25 1 1.2267 1.4924 -5.9567 26 1 1.4309 -1.5585 1.5904 27 1 2.8406 1.1916 2.1262 28 1 2.5946 -0.1592 3.3578 29 1 3.9425 -1.7360 1.8973 30 1 4.1884 -0.3858 0.6655 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535657058.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:26 Heat of formation + Delta-G solvation = -49.247038 kcal Electronic energy + Delta-G solvation = -11451.126386 eV Core-core repulsion = 9439.460436 eV Total energy + Delta-G solvation = -2011.665951 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.120 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.02706 -35.71081 -32.30188 -31.82457 -28.33727 -25.08127 -22.89530 -22.10468 -20.45836 -19.23743 -16.78279 -15.19597 -14.76382 -14.50348 -13.99324 -13.78705 -12.88597 -12.64649 -11.86592 -11.64732 -11.30672 -11.01712 -10.90619 -10.81313 -10.63069 -10.52811 -10.13245 -9.90794 -9.78628 -9.35141 -8.89586 -8.50986 -7.85948 -5.94845 -4.12315 3.31512 3.36689 3.38700 4.11601 4.43349 5.00533 5.25177 5.27283 5.31762 5.63267 5.83893 5.91623 5.99579 6.09550 6.23074 6.33476 6.36635 6.49886 6.53092 6.72689 6.88602 7.01492 7.13461 7.24772 7.81737 7.94167 8.27768 8.91030 9.45723 9.65164 11.09012 Molecular weight = 184.12amu Principal moments of inertia in cm(-1) A = 0.060829 B = 0.010113 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.197475 B = 2768.091988 C = 3059.683946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 H 0.061 0.939 4 C -0.133 4.133 5 C 0.228 3.772 6 H 0.052 0.948 7 O -0.562 6.562 8 C -0.571 4.571 9 H 0.053 0.947 10 C 0.078 3.922 11 N -0.862 5.862 12 Si 0.887 3.113 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.140 4.140 17 C -0.188 4.188 18 C -0.183 4.183 19 H 0.043 0.957 20 H 0.032 0.968 21 H 0.088 0.912 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.343 0.657 25 H 0.260 0.740 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.909 -3.003 9.630 10.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 H 0.080 0.920 4 C -0.171 4.171 5 C 0.171 3.829 6 H 0.070 0.930 7 O -0.364 6.364 8 C -0.609 4.609 9 H 0.072 0.928 10 C -0.128 4.128 11 N -0.498 5.498 12 Si 0.714 3.286 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C -0.158 4.158 17 C -0.225 4.225 18 C -0.220 4.220 19 H 0.062 0.938 20 H 0.051 0.949 21 H 0.107 0.893 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.186 0.814 25 H 0.069 0.931 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.932 -2.199 9.564 9.858 hybrid contribution 0.545 -1.094 -0.880 1.506 sum 1.477 -3.293 8.684 9.404 Atomic orbital electron populations 1.21967 0.94869 1.02045 1.01215 1.20757 0.96164 0.98259 0.92402 0.92040 1.22371 1.00013 0.99189 0.95493 1.19354 0.78975 0.95309 0.89245 0.93028 1.86520 1.23030 1.31612 1.95287 1.21707 1.33212 1.13136 0.92823 0.92835 1.25054 0.94296 0.94478 0.98953 1.70063 1.36500 1.19701 1.23506 0.86775 0.79852 0.79460 0.82488 1.20216 1.21245 1.20242 1.22508 0.94198 1.01257 0.97884 1.22985 1.06011 0.97628 0.95853 1.22914 0.94914 1.01175 1.03004 0.93804 0.94912 0.89295 0.93338 0.92698 0.81364 0.93051 0.88620 0.89088 0.89647 0.89536 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.29 37.16 0.31 -2.18 16 2 C -0.06 -1.03 2.52 -90.62 -0.23 -1.25 16 3 H 0.06 1.16 7.89 -51.93 -0.41 0.75 16 4 C -0.13 -2.74 4.34 -26.73 -0.12 -2.86 16 5 C 0.23 5.79 2.79 -27.89 -0.08 5.71 16 6 H 0.05 1.45 8.13 -51.93 -0.42 1.03 16 7 O -0.56 -14.11 9.57 -35.23 -0.34 -14.44 16 8 C -0.57 -15.90 8.76 -34.44 -0.30 -16.20 16 9 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 10 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 11 N -0.86 -25.77 12.84 55.43 0.71 -25.05 16 12 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 16 C -0.14 -2.13 5.14 -90.62 -0.47 -2.60 16 17 C -0.19 -2.51 10.18 -26.71 -0.27 -2.78 16 18 C -0.18 -2.58 9.65 -26.71 -0.26 -2.84 16 19 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 20 H 0.03 0.50 8.13 -51.93 -0.42 0.08 16 21 H 0.09 1.75 5.91 -51.93 -0.31 1.44 16 22 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 23 H 0.05 1.13 7.08 -51.93 -0.37 0.77 16 24 H 0.34 7.78 9.04 45.56 0.41 8.20 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.10 1.38 8.11 -51.92 -0.42 0.96 16 27 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.43 7.58 -51.93 -0.39 1.04 16 LS Contribution 248.81 15.07 3.75 3.75 Total: -1.00 -29.45 248.81 -6.38 -35.83 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.98 Total: 6.37 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -1.51 Total: -22.89 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.71 Total: -25.05 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.34 Total: -14.44 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.45 -6.38 -35.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535657058.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.417 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds