Wall clock time and date at job start Mon Mar 30 2020 01:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86789 * 120.00216 * 2 1 4 4 H 1.48500 * 109.47564 * 240.00306 * 3 2 1 5 5 H 1.48504 * 109.47014 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47348 * 119.99719 * 3 2 1 7 7 C 1.37883 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99688 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99959 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.87976 * 62.39004 * 9 7 2 11 11 C 1.54905 * 110.99019 * 298.54126 * 9 7 2 12 12 N 1.47843 * 104.80075 * 204.83989 * 11 9 7 13 13 C 1.47444 * 108.56319 * 24.10091 * 12 11 9 14 14 H 1.08999 * 109.88616 * 239.44423 * 13 12 11 15 15 C 1.50697 * 109.89324 * 118.41527 * 13 12 11 16 16 O 1.20833 * 119.99747 * 341.45654 * 15 13 12 17 17 O 1.34230 * 120.00262 * 161.17276 * 15 13 12 18 18 C 1.54321 * 107.23435 * 359.00916 * 13 12 11 19 19 H 0.96993 * 119.99723 * 0.02562 * 1 2 3 20 20 H 1.09006 * 110.36936 * 86.01189 * 11 9 7 21 21 H 1.09004 * 110.37763 * 323.67689 * 11 9 7 22 22 H 1.00896 * 111.00234 * 146.35940 * 12 11 9 23 23 H 0.96699 * 116.99771 * 180.27188 * 17 15 13 24 24 H 1.08997 * 110.70727 * 96.09992 * 18 13 12 25 25 H 1.09003 * 110.70401 * 219.33844 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6484 -2.5990 -0.9044 11 6 0.3746 -2.6350 1.2684 12 7 0.2045 -4.0916 1.4558 13 6 1.3286 -4.7839 0.7991 14 1 0.9506 -5.4596 0.0320 15 6 2.1201 -5.5594 1.8204 16 8 2.0154 -5.2941 2.9946 17 8 2.9372 -6.5487 1.4262 18 6 2.2200 -3.7005 0.1564 19 1 -0.4849 0.8400 -0.0004 20 1 -0.5927 -2.1566 1.1148 21 1 0.8825 -2.1985 2.1284 22 1 0.1578 -4.3271 2.4358 23 1 3.4211 -7.0203 2.1179 24 1 3.0491 -3.4427 0.8153 25 1 2.5868 -4.0301 -0.8157 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035881868.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:58 Heat of formation + Delta-G solvation = -98.362535 kcal Electronic energy + Delta-G solvation = -11393.685393 eV Core-core repulsion = 9178.630629 eV Total energy + Delta-G solvation = -2215.054764 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.21610 -37.27092 -35.80483 -32.77890 -29.48044 -28.77610 -24.61736 -22.93977 -19.88158 -19.67017 -18.00440 -17.10509 -15.80747 -15.54143 -14.82106 -14.36377 -13.81551 -12.89182 -12.38543 -11.97272 -11.74940 -11.39023 -11.31042 -11.00234 -10.68826 -10.50503 -10.47202 -9.80087 -9.35236 -9.10919 -8.48094 -7.79860 -6.09032 -4.13405 2.43252 3.29336 3.29541 3.34335 3.36735 4.38024 5.00717 5.24303 5.38912 5.58845 5.66537 6.20703 6.40012 6.62129 6.71601 6.80379 6.93288 7.46658 7.58386 7.71573 7.88293 8.03200 8.13984 8.32740 8.88319 9.51628 11.00635 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.070407 B = 0.010763 C = 0.010235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.591130 B = 2600.805552 C = 2734.997657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.051 3.949 10 H 0.043 0.957 11 C 0.058 3.942 12 N -0.671 5.671 13 C 0.085 3.915 14 H 0.108 0.892 15 C 0.467 3.533 16 O -0.524 6.524 17 O -0.516 6.516 18 C -0.124 4.124 19 H 0.263 0.737 20 H 0.091 0.909 21 H 0.031 0.969 22 H 0.336 0.664 23 H 0.401 0.599 24 H 0.061 0.939 25 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -8.175 1.311 8.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.032 3.968 10 H 0.061 0.939 11 C -0.070 4.070 12 N -0.304 5.304 13 C -0.027 4.027 14 H 0.126 0.874 15 C 0.309 3.691 16 O -0.413 6.413 17 O -0.326 6.326 18 C -0.162 4.162 19 H 0.073 0.927 20 H 0.109 0.891 21 H 0.049 0.951 22 H 0.155 0.845 23 H 0.259 0.741 24 H 0.079 0.921 25 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.496 -7.855 0.807 8.281 hybrid contribution 1.539 0.747 1.240 2.113 sum 4.035 -7.108 2.048 8.426 Atomic orbital electron populations 1.69932 1.05882 1.26948 1.49636 1.24992 0.94915 0.99204 0.94659 0.86614 0.79588 0.82910 0.78650 1.20164 1.21185 1.20285 1.20979 0.92848 0.90093 1.52040 0.92423 1.19776 0.91620 0.91092 0.94269 0.93876 1.23095 1.02055 0.82848 0.99009 1.62582 1.37987 1.10585 1.19218 1.22309 0.90715 0.95752 0.93928 0.87440 1.24810 0.76898 0.77107 0.90246 1.90660 1.64110 1.66276 1.20221 1.84606 1.55964 1.46851 1.45225 1.22910 0.98465 0.95365 0.99508 0.92711 0.89056 0.95054 0.84513 0.74121 0.92074 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 12.06 55.43 0.67 -24.34 15 2 C 0.06 1.77 5.34 -17.82 -0.10 1.68 15 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.52 -14.11 8.55 -34.44 -0.29 -14.40 15 8 H 0.06 1.53 7.79 -52.49 -0.41 1.13 15 9 C 0.05 1.27 2.96 -89.63 -0.27 1.01 15 10 H 0.04 1.13 8.14 -51.93 -0.42 0.71 15 11 C 0.06 1.39 6.32 -2.30 -0.01 1.37 15 12 N -0.67 -13.82 7.34 -105.02 -0.77 -14.59 15 13 C 0.08 1.57 4.01 -67.88 -0.27 1.29 15 14 H 0.11 1.79 8.14 -51.93 -0.42 1.36 15 15 C 0.47 8.02 7.40 36.00 0.27 8.28 15 16 O -0.52 -10.28 16.35 -18.76 -0.31 -10.59 15 17 O -0.52 -6.88 13.42 -39.26 -0.53 -7.41 15 18 C -0.12 -2.53 5.90 -24.90 -0.15 -2.68 15 19 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 20 H 0.09 2.37 7.43 -51.93 -0.39 1.98 15 21 H 0.03 0.79 8.03 -51.93 -0.42 0.37 15 22 H 0.34 6.75 7.18 -39.29 -0.28 6.46 15 23 H 0.40 3.42 9.10 45.56 0.41 3.84 15 24 H 0.06 1.28 7.73 -51.93 -0.40 0.88 15 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 LS Contribution 220.50 15.07 3.32 3.32 Total: -1.00 -29.69 220.50 -5.34 -35.03 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -1.88 Total: 6.02 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.82 Total: -3.45 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: -0.10 Total: -38.93 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.83 Total: -18.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.69 -5.34 -35.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035881868.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.335 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds