Wall clock time and date at job start Mon Mar 30 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99853 * 2 1 4 4 H 1.48502 * 109.47193 * 239.99974 * 3 2 1 5 5 H 1.48507 * 109.47303 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47515 * 119.99769 * 3 2 1 7 7 C 1.37875 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00055 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47419 * 180.02562 * 9 7 2 11 11 C 1.36762 * 127.14065 * 265.02896 * 10 9 7 12 12 N 1.30302 * 107.31543 * 179.97438 * 11 10 9 13 13 N 1.28521 * 110.07810 * 359.97438 * 12 11 10 14 14 C 1.31284 * 109.85898 * 0.02562 * 13 12 11 15 15 S 1.76198 * 126.48228 * 179.97438 * 14 13 12 16 16 H 0.96993 * 120.00513 * 0.02562 * 1 2 3 17 17 H 1.09003 * 109.46851 * 60.00179 * 9 7 2 18 18 H 1.08995 * 109.47002 * 300.00361 * 9 7 2 19 19 H 1.07999 * 126.34354 * 359.96049 * 11 10 9 20 20 H 1.41005 * 100.00086 * 90.02435 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.6679 -4.3026 -1.0828 12 7 3.4940 -5.2087 -0.6418 13 7 3.5830 -5.1389 0.6385 14 6 2.8113 -4.1764 1.0874 15 16 2.6000 -3.7021 2.7711 16 1 -0.4850 0.8399 -0.0004 17 1 0.6242 -2.5575 -0.8881 18 1 0.6248 -2.5563 0.8919 19 1 2.3997 -4.1289 -2.1144 20 1 3.6213 -2.7364 2.8834 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080528.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:48 Heat of formation + Delta-G solvation = 56.780052 kcal Electronic energy + Delta-G solvation = -9115.179851 eV Core-core repulsion = 7246.065102 eV Total energy + Delta-G solvation = -1869.114749 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.032 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -43.80197 -36.52808 -34.43977 -31.62617 -29.64462 -25.69261 -23.46954 -23.12153 -19.15633 -18.94220 -17.57623 -16.88124 -16.49149 -15.78215 -15.46226 -14.51325 -13.83839 -13.41300 -12.82088 -12.73577 -12.53150 -12.23708 -12.14736 -11.64611 -10.89805 -10.75411 -10.34617 -9.26168 -8.40139 -6.56194 0.09898 0.55926 1.37387 1.37614 1.43609 1.48326 1.83471 1.95852 2.31624 2.94705 3.76563 4.13306 4.20603 4.78489 4.89024 5.32066 5.44330 5.71323 5.85553 6.50599 7.15666 7.53633 8.68316 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.048691 B = 0.013490 C = 0.012159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.922601 B = 2075.143595 C = 2302.206801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.034 3.966 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.561 4.561 8 H 0.049 0.951 9 C 0.244 3.756 10 N -0.437 5.437 11 C 0.173 3.827 12 N -0.333 5.333 13 N -0.285 5.285 14 C 0.132 3.868 15 S -0.006 6.006 16 H 0.275 0.725 17 H 0.058 0.942 18 H 0.054 0.946 19 H 0.254 0.746 20 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.751 -1.437 1.143 2.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.169 4.169 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.198 1.198 7 C -0.599 4.599 8 H 0.067 0.933 9 C 0.124 3.876 10 N -0.125 5.125 11 C -0.117 4.117 12 N -0.176 5.176 13 N -0.131 5.131 14 C -0.244 4.244 15 S 0.143 5.857 16 H 0.085 0.915 17 H 0.076 0.924 18 H 0.072 0.928 19 H 0.269 0.731 20 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.201 -2.322 2.003 3.775 hybrid contribution 0.173 2.291 -1.068 2.534 sum 2.374 -0.031 0.935 2.552 Atomic orbital electron populations 1.69956 1.07111 1.29105 1.48325 1.25562 0.95653 1.02208 0.93430 0.85527 0.78428 0.78410 0.78899 1.19630 1.19956 1.19805 1.21222 0.92893 0.90707 1.55035 0.93256 1.19700 0.86795 0.80742 1.00395 1.47837 1.32689 1.26070 1.05944 1.27380 0.95954 0.91654 0.96682 1.73908 1.18862 1.21568 1.03287 1.74547 1.18303 1.16403 1.03876 1.26168 1.02325 0.99929 0.96022 1.86317 1.49532 1.52601 0.97252 0.91549 0.92446 0.92815 0.73054 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.86 13.29 21.45 0.28 -46.58 14 2 C 0.03 1.70 5.46 84.65 0.46 2.16 14 3 Si 0.96 39.50 29.54 68.60 2.03 41.53 14 4 H -0.27 -10.97 7.11 99.48 0.71 -10.27 14 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 14 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 14 7 C -0.56 -27.68 9.39 25.60 0.24 -27.44 14 8 H 0.05 2.51 7.81 -2.91 -0.02 2.49 14 9 C 0.24 11.00 5.77 85.64 0.49 11.50 14 10 N -0.44 -18.23 2.79 -531.86 -1.49 -19.71 14 11 C 0.17 6.44 12.80 179.76 2.30 8.74 14 12 N -0.33 -13.74 12.18 -59.32 -0.72 -14.46 14 13 N -0.28 -12.31 12.23 -56.86 -0.70 -13.00 14 14 C 0.13 5.49 8.37 179.55 1.50 6.99 14 15 S -0.01 -0.22 25.89 -56.49 -1.46 -1.68 14 16 H 0.28 13.43 8.31 -92.71 -0.77 12.66 14 17 H 0.06 2.59 8.14 -2.39 -0.02 2.57 14 18 H 0.05 2.56 8.01 -2.39 -0.02 2.54 14 19 H 0.25 6.94 8.06 -2.91 -0.02 6.92 14 20 H 0.11 3.72 9.55 73.80 0.70 4.42 14 Total: -1.00 -56.12 208.91 4.92 -51.20 By element: Atomic # 1 Polarization: -1.22 SS G_CDS: 1.97 Total: 0.75 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: 5.00 Total: 1.95 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.62 Total: -93.75 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.03 Total: 41.53 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.46 Total: -1.68 kcal Total: -56.12 4.92 -51.20 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080528.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.982 kcal (2) G-P(sol) polarization free energy of solvation -56.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds