Wall clock time and date at job start Mon Mar 30 2020 01:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34422 * 124.35053 * 2 1 4 4 S 1.59903 * 124.93946 * 359.57314 * 3 2 1 5 5 C 1.51278 * 110.11987 * 179.61303 * 3 2 1 6 6 C 1.54629 * 104.19155 * 343.74471 * 5 3 2 7 7 C 1.46762 * 124.35128 * 180.02562 * 2 1 3 8 8 H 1.09003 * 110.31868 * 316.03627 * 7 2 1 9 9 C 1.50698 * 110.24463 * 78.00065 * 7 2 1 10 10 H 1.07995 * 120.00398 * 31.32593 * 9 7 2 11 11 C 1.37880 * 119.99932 * 211.33269 * 9 7 2 12 12 N 1.31508 * 119.99813 * 174.52589 * 11 9 7 13 13 Si 1.86804 * 119.99710 * 354.25525 * 11 9 7 14 14 H 1.48504 * 109.47324 * 94.42551 * 13 11 9 15 15 H 1.48502 * 109.46824 * 214.41953 * 13 11 9 16 16 H 1.48498 * 109.47378 * 334.42089 * 13 11 9 17 17 H 1.09002 * 109.47479 * 265.41612 * 1 2 3 18 18 H 1.08996 * 109.47240 * 25.41603 * 1 2 3 19 19 H 1.08997 * 109.47349 * 145.41740 * 1 2 3 20 20 H 1.08997 * 110.48399 * 225.06868 * 5 3 2 21 21 H 1.08990 * 110.60367 * 102.47693 * 5 3 2 22 22 H 1.09010 * 110.96766 * 266.67819 * 6 5 3 23 23 H 1.09003 * 110.97160 * 142.92056 * 6 5 3 24 24 H 0.97006 * 119.99732 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2234 1.1098 0.0000 4 16 1.6580 2.6055 -0.0098 5 6 3.6897 0.7379 0.0096 6 6 3.7011 -0.7487 0.4350 7 6 2.2930 -1.2117 -0.0005 8 1 1.8992 -1.9396 0.7087 9 6 2.3446 -1.8074 -1.3838 10 1 2.2854 -1.1660 -2.2506 11 6 2.4673 -3.1715 -1.5428 12 7 2.4041 -3.7017 -2.7446 13 14 2.7308 -4.2656 -0.0517 14 1 1.4213 -4.7831 0.4202 15 1 3.6085 -5.4046 -0.4225 16 1 3.3720 -3.4790 1.0324 17 1 -0.3634 -0.0821 1.0244 18 1 -0.3633 0.9282 -0.4410 19 1 -0.3634 -0.8460 -0.5833 20 1 4.2327 1.3459 0.7332 21 1 4.1212 0.8535 -0.9846 22 1 3.8273 -0.8449 1.5134 23 1 4.4753 -1.3010 -0.0976 24 1 2.4901 -4.6615 -2.8563 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080621.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:06 Heat of formation + Delta-G solvation = -9.108841 kcal Electronic energy + Delta-G solvation = -9610.559448 eV Core-core repulsion = 7842.127886 eV Total energy + Delta-G solvation = -1768.431562 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 185.057 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.90493 -35.02711 -33.74162 -31.30614 -27.86625 -26.49329 -22.87557 -21.90907 -19.41931 -18.48360 -17.12277 -16.33394 -15.64732 -14.89560 -14.63162 -14.55000 -13.88369 -13.35108 -13.09187 -13.03141 -12.64502 -12.31884 -12.19414 -11.95788 -11.84960 -11.07412 -10.84010 -9.05556 -8.80889 -8.44220 -6.56743 0.06869 1.26096 1.34643 1.39007 1.47652 2.05753 2.24749 2.90119 3.37475 3.69691 4.05325 4.26837 4.40094 4.47677 4.61602 4.76180 4.81798 4.96268 5.09585 5.36682 5.58313 5.87041 6.11060 6.50919 7.11207 8.71277 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.060672 B = 0.013742 C = 0.013125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.383886 B = 2037.037132 C = 2132.827314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.510 5.510 3 C 0.297 3.703 4 S -0.594 6.594 5 C -0.104 4.104 6 C -0.129 4.129 7 C 0.204 3.796 8 H 0.070 0.930 9 C -0.538 4.538 10 H 0.028 0.972 11 C 0.030 3.970 12 N -0.931 5.931 13 Si 0.940 3.060 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.226 1.226 17 H 0.094 0.906 18 H 0.086 0.914 19 H 0.082 0.918 20 H 0.123 0.877 21 H 0.100 0.900 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 0.741 9.013 9.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.205 5.205 3 C 0.038 3.962 4 S -0.460 6.460 5 C -0.146 4.146 6 C -0.168 4.168 7 C 0.101 3.899 8 H 0.088 0.912 9 C -0.576 4.576 10 H 0.046 0.954 11 C -0.171 4.171 12 N -0.568 5.568 13 Si 0.761 3.239 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.148 1.148 17 H 0.113 0.887 18 H 0.105 0.895 19 H 0.100 0.900 20 H 0.141 0.859 21 H 0.118 0.882 22 H 0.110 0.890 23 H 0.111 0.889 24 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.515 1.299 8.896 9.005 hybrid contribution 0.238 -1.647 -0.303 1.691 sum 0.753 -0.348 8.593 8.633 Atomic orbital electron populations 1.22062 0.76275 1.04584 1.04003 1.48735 1.08307 1.07063 1.56376 1.24808 0.97546 0.93639 0.80232 1.90507 1.83559 1.06718 1.65190 1.22119 0.89896 0.97701 1.04859 1.23025 0.97566 0.94489 1.01757 1.20383 0.88959 0.83969 0.96630 0.91249 1.21034 1.53104 0.92619 0.90880 0.95405 1.25874 0.92910 0.99151 0.99185 1.70039 1.48788 1.13151 1.24843 0.85846 0.79418 0.78734 0.79878 1.19260 1.20835 1.14786 0.88747 0.89504 0.89953 0.85933 0.88221 0.89009 0.88930 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.41 10.83 127.77 1.38 3.79 14 2 N -0.51 -19.70 2.96 -702.56 -2.08 -21.78 14 3 C 0.30 11.53 6.76 87.90 0.59 12.13 14 4 S -0.59 -24.99 29.10 -56.49 -1.64 -26.63 14 5 C -0.10 -3.44 6.74 30.59 0.21 -3.24 14 6 C -0.13 -4.25 6.24 31.65 0.20 -4.06 14 7 C 0.20 8.12 2.51 44.70 0.11 8.23 14 8 H 0.07 2.59 5.82 -2.39 -0.01 2.58 14 9 C -0.54 -27.09 9.12 25.60 0.23 -26.86 14 10 H 0.03 1.66 8.06 -2.91 -0.02 1.63 14 11 C 0.03 1.54 5.47 84.66 0.46 2.00 14 12 N -0.93 -52.76 13.96 21.45 0.30 -52.46 14 13 Si 0.94 36.79 26.95 68.60 1.85 38.64 14 14 H -0.27 -10.23 7.11 99.48 0.71 -9.52 14 15 H -0.28 -11.21 7.11 99.48 0.71 -10.51 14 16 H -0.23 -7.56 6.55 99.48 0.65 -6.91 14 17 H 0.09 2.57 8.14 -2.39 -0.02 2.55 14 18 H 0.09 2.96 7.18 -2.39 -0.02 2.94 14 19 H 0.08 2.79 8.14 -2.39 -0.02 2.77 14 20 H 0.12 3.37 8.14 -2.39 -0.02 3.35 14 21 H 0.10 3.43 8.14 -2.39 -0.02 3.41 14 22 H 0.09 2.48 8.14 -2.38 -0.02 2.46 14 23 H 0.09 3.11 7.89 -2.39 -0.02 3.09 14 24 H 0.27 14.39 8.31 -92.70 -0.77 13.62 14 Total: -1.00 -61.50 219.34 2.74 -58.76 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.12 Total: 11.47 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 3.19 Total: -8.00 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: -1.78 Total: -74.24 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 1.85 Total: 38.64 kcal Atomic # 16 Polarization: -24.99 SS G_CDS: -1.64 Total: -26.63 kcal Total: -61.50 2.74 -58.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080621.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.656 kcal (2) G-P(sol) polarization free energy of solvation -61.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds