Wall clock time and date at job start Mon Mar 30 2020 01:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34416 * 124.34981 * 2 1 4 4 S 1.59899 * 124.94432 * 359.56062 * 3 2 1 5 5 C 1.51280 * 110.11281 * 179.59255 * 3 2 1 6 6 C 1.54626 * 104.19837 * 343.74984 * 5 3 2 7 7 C 1.46759 * 124.34669 * 180.02562 * 2 1 3 8 8 H 1.09005 * 110.24621 * 78.01416 * 7 2 1 9 9 C 1.50705 * 110.24847 * 316.01711 * 7 2 1 10 10 H 1.08001 * 119.99425 * 328.87179 * 9 7 2 11 11 C 1.37872 * 120.00272 * 148.87536 * 9 7 2 12 12 N 1.31518 * 119.99706 * 5.11667 * 11 9 7 13 13 Si 1.86795 * 120.00134 * 185.12168 * 11 9 7 14 14 H 1.48495 * 109.47280 * 59.99750 * 13 11 9 15 15 H 1.48498 * 109.47437 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.47047 * 299.99718 * 13 11 9 17 17 H 1.08997 * 109.47144 * 275.12036 * 1 2 3 18 18 H 1.08998 * 109.47170 * 35.11734 * 1 2 3 19 19 H 1.09000 * 109.47443 * 155.12052 * 1 2 3 20 20 H 1.09001 * 110.48675 * 225.06825 * 5 3 2 21 21 H 1.09000 * 110.59742 * 102.48382 * 5 3 2 22 22 H 1.09008 * 110.96914 * 266.68010 * 6 5 3 23 23 H 1.08997 * 111.00353 * 142.93121 * 6 5 3 24 24 H 0.97005 * 119.99137 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 16 1.6582 2.6054 -0.0101 5 6 3.6898 0.7377 0.0101 6 6 3.7010 -0.7488 0.4356 7 6 2.2931 -1.2117 -0.0005 8 1 2.3305 -1.6425 -1.0011 9 6 1.7474 -2.2168 0.9809 10 1 1.2406 -1.8799 1.8732 11 6 1.8950 -3.5662 0.7397 12 7 2.5984 -3.9764 -0.2930 13 14 1.0960 -4.8117 1.8797 14 1 -0.3748 -4.6068 1.8837 15 1 1.4026 -6.1850 1.4054 16 1 1.6244 -4.6333 3.2560 17 1 -0.3633 0.0917 1.0235 18 1 -0.3633 0.8406 -0.5912 19 1 -0.3634 -0.9323 -0.4323 20 1 4.2327 1.3458 0.7337 21 1 4.1216 0.8532 -0.9841 22 1 3.8269 -0.8449 1.5141 23 1 4.4754 -1.3016 -0.0962 24 1 2.7020 -4.9259 -0.4628 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080623.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:08 Heat of formation + Delta-G solvation = -11.845269 kcal Electronic energy + Delta-G solvation = -9548.031930 eV Core-core repulsion = 7779.481707 eV Total energy + Delta-G solvation = -1768.550223 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 185.057 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.77719 -35.07443 -33.67902 -30.84061 -27.72148 -26.56769 -22.72514 -22.06271 -18.97957 -18.29739 -17.20174 -16.59071 -15.48721 -14.84145 -14.47677 -14.15334 -13.84469 -13.41732 -12.93862 -12.88339 -12.59776 -12.44702 -12.31754 -11.97461 -11.70498 -11.03263 -10.71873 -9.06793 -8.77784 -8.33360 -6.50707 0.10382 1.31275 1.41308 1.42648 1.49650 2.11595 2.33642 2.96822 3.41476 3.82347 4.18591 4.31515 4.46479 4.58277 4.77203 4.80727 4.88837 5.17046 5.27320 5.52201 5.68509 5.77219 6.10036 6.62106 7.20934 8.70936 Molecular weight = 185.06amu Principal moments of inertia in cm(-1) A = 0.066751 B = 0.012479 C = 0.011275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.369194 B = 2243.214635 C = 2482.747702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.508 5.508 3 C 0.288 3.712 4 S -0.600 6.600 5 C -0.110 4.110 6 C -0.111 4.111 7 C 0.223 3.777 8 H 0.053 0.947 9 C -0.545 4.545 10 H 0.058 0.942 11 C 0.035 3.965 12 N -0.907 5.907 13 Si 0.961 3.039 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.271 1.271 17 H 0.072 0.928 18 H 0.087 0.913 19 H 0.086 0.914 20 H 0.113 0.887 21 H 0.115 0.885 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 1.196 0.760 1.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.202 5.202 3 C 0.028 3.972 4 S -0.466 6.466 5 C -0.152 4.152 6 C -0.151 4.151 7 C 0.121 3.879 8 H 0.071 0.929 9 C -0.583 4.583 10 H 0.076 0.924 11 C -0.168 4.168 12 N -0.543 5.543 13 Si 0.786 3.214 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.196 1.196 17 H 0.090 0.910 18 H 0.105 0.895 19 H 0.105 0.895 20 H 0.132 0.868 21 H 0.133 0.867 22 H 0.087 0.913 23 H 0.103 0.897 24 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.497 1.728 0.637 1.908 hybrid contribution -0.048 -1.801 0.421 1.850 sum -0.545 -0.073 1.058 1.192 Atomic orbital electron populations 1.21826 0.76545 1.03743 1.03244 1.49059 1.08446 1.07440 1.55292 1.24801 0.97550 0.93691 0.81133 1.90462 1.83713 1.06788 1.65641 1.22259 0.89952 0.97774 1.05235 1.22750 0.97692 0.92986 1.01721 1.20143 0.87728 0.81623 0.98456 0.92941 1.21163 1.39432 0.90908 1.06784 0.92405 1.25645 0.94531 1.00072 0.96571 1.69980 1.38515 1.16752 1.29083 0.85557 0.79188 0.77667 0.79033 1.19440 1.20665 1.19618 0.90965 0.89499 0.89546 0.86847 0.86666 0.91292 0.89676 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.17 9.98 127.77 1.27 4.44 14 2 N -0.51 -20.73 3.18 -702.51 -2.23 -22.96 14 3 C 0.29 11.46 6.76 87.90 0.59 12.06 14 4 S -0.60 -25.50 29.27 -56.49 -1.65 -27.16 14 5 C -0.11 -3.73 6.75 30.59 0.21 -3.52 14 6 C -0.11 -4.26 6.67 31.66 0.21 -4.05 14 7 C 0.22 9.84 3.31 44.71 0.15 9.99 14 8 H 0.05 2.59 7.49 -2.38 -0.02 2.57 14 9 C -0.54 -26.14 7.86 25.60 0.20 -25.94 14 10 H 0.06 2.82 7.82 -2.91 -0.02 2.79 14 11 C 0.04 1.70 5.45 84.65 0.46 2.16 14 12 N -0.91 -46.16 12.90 21.45 0.28 -45.89 14 13 Si 0.96 38.77 29.54 68.60 2.03 40.80 14 14 H -0.27 -10.65 7.11 99.48 0.71 -9.94 14 15 H -0.28 -11.20 7.11 99.48 0.71 -10.50 14 16 H -0.27 -10.81 7.11 99.48 0.71 -10.11 14 17 H 0.07 2.51 8.14 -2.39 -0.02 2.49 14 18 H 0.09 2.95 7.51 -2.39 -0.02 2.94 14 19 H 0.09 3.03 8.11 -2.39 -0.02 3.01 14 20 H 0.11 3.43 8.14 -2.39 -0.02 3.42 14 21 H 0.12 3.48 8.14 -2.39 -0.02 3.46 14 22 H 0.07 2.69 7.91 -2.38 -0.02 2.67 14 23 H 0.08 3.17 8.14 -2.39 -0.02 3.15 14 24 H 0.27 13.21 8.31 -92.70 -0.77 12.44 14 Total: -1.00 -54.37 222.71 2.69 -51.68 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.18 Total: 8.38 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 3.10 Total: -4.86 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.96 Total: -68.85 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Atomic # 16 Polarization: -25.50 SS G_CDS: -1.65 Total: -27.16 kcal Total: -54.37 2.69 -51.68 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080623.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.831 kcal (2) G-P(sol) polarization free energy of solvation -54.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds