Wall clock time and date at job start Mon Mar 30 2020 01:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.60134 * 2 1 4 4 C 1.53015 * 109.60819 * 120.33046 * 2 1 3 5 5 N 1.46092 * 109.92853 * 168.91667 * 4 2 1 6 6 C 1.37097 * 118.73201 * 161.61487 * 5 4 2 7 7 H 1.07999 * 120.00030 * 140.95952 * 6 5 4 8 8 C 1.38946 * 120.00135 * 320.96389 * 6 5 4 9 9 N 1.31410 * 120.00144 * 156.72145 * 8 6 5 10 10 Si 1.86806 * 120.00118 * 336.99074 * 8 6 5 11 11 H 1.48507 * 109.46758 * 95.32471 * 10 8 6 12 12 H 1.48492 * 109.47369 * 215.32796 * 10 8 6 13 13 H 1.48497 * 109.46816 * 335.33028 * 10 8 6 14 14 C 1.33869 * 122.53605 * 341.90103 * 5 4 2 15 15 O 1.21292 * 118.83051 * 181.62194 * 14 5 4 16 16 C 1.50334 * 122.34673 * 1.37809 * 14 5 4 17 17 O 1.42968 * 109.85421 * 344.54448 * 16 14 5 18 18 H 1.08996 * 109.46848 * 299.66493 * 1 2 3 19 19 H 1.08998 * 109.47424 * 59.67041 * 1 2 3 20 20 H 1.09003 * 109.46715 * 179.67612 * 1 2 3 21 21 H 1.09001 * 109.39939 * 48.77720 * 4 2 1 22 22 H 1.09002 * 109.39403 * 289.05752 * 4 2 1 23 23 H 0.97001 * 119.99873 * 179.97438 * 9 8 6 24 24 H 1.09000 * 109.54827 * 224.33244 * 16 14 5 25 25 H 1.09001 * 109.17652 * 104.52828 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0435 -0.7279 1.2441 5 7 3.4803 -0.9642 1.1253 6 6 4.1976 -1.2477 2.2587 7 1 4.9853 -1.9859 2.2288 8 6 3.9110 -0.5853 3.4460 9 7 4.2351 -1.1301 4.5971 10 14 3.0582 1.0763 3.4063 11 1 1.5957 0.8863 3.5806 12 1 3.5813 1.9275 4.5049 13 1 3.3197 1.7357 2.1018 14 6 4.1245 -0.9092 -0.0470 15 8 5.3137 -1.1462 -0.0725 16 6 3.4254 -0.5695 -1.3338 17 8 2.0106 -0.6847 -1.1628 18 1 -0.3633 0.5086 0.8930 19 1 -0.3634 0.5189 -0.8870 20 1 -0.3633 -1.0277 -0.0058 21 1 1.5268 -1.6824 1.3442 22 1 1.8488 -0.1182 2.1264 23 1 4.0353 -0.6675 5.4260 24 1 3.7524 -1.2524 -2.1178 25 1 3.6740 0.4533 -1.6171 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039080639.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:37 Heat of formation + Delta-G solvation = -63.632144 kcal Electronic energy + Delta-G solvation = -11855.839407 eV Core-core repulsion = 9642.290666 eV Total energy + Delta-G solvation = -2213.548741 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.79491 -36.91081 -34.92885 -32.28612 -31.55501 -27.41469 -26.15176 -24.42507 -21.65901 -18.81272 -17.42533 -17.00212 -16.16971 -14.88220 -14.76542 -14.48316 -13.92756 -13.28785 -12.58745 -12.52102 -12.42450 -12.12029 -11.99773 -11.09010 -10.98511 -10.86701 -10.29576 -10.05133 -9.75184 -9.01721 -8.35097 -7.78508 -6.46302 -4.04512 2.94830 3.14764 3.18323 3.59034 3.90656 4.08243 4.36595 4.89550 4.98509 5.31277 5.33781 5.51436 5.66347 5.74193 5.90346 5.94857 6.02868 6.20235 6.37047 7.18477 7.51115 8.27523 8.44595 8.90098 9.26607 9.66279 10.65552 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.039237 B = 0.020891 C = 0.015461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.441566 B = 1339.991883 C = 1810.618804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.065 3.935 3 H 0.064 0.936 4 C 0.073 3.927 5 N -0.458 5.458 6 C -0.323 4.323 7 H 0.107 0.893 8 C 0.063 3.937 9 N -0.858 5.858 10 Si 0.873 3.127 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.432 3.568 15 O -0.568 6.568 16 C 0.052 3.948 17 O -0.375 6.375 18 H 0.072 0.928 19 H 0.066 0.934 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.275 0.725 24 H 0.116 0.884 25 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.840 4.380 -6.799 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.007 3.993 3 H 0.082 0.918 4 C -0.050 4.050 5 N -0.180 5.180 6 C -0.450 4.450 7 H 0.125 0.875 8 C -0.144 4.144 9 N -0.494 5.494 10 Si 0.700 3.300 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.220 3.780 15 O -0.451 6.451 16 C -0.027 4.027 17 O -0.294 6.294 18 H 0.091 0.909 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.134 0.866 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.368 4.151 -6.715 11.504 hybrid contribution -0.271 1.065 0.424 1.178 sum -8.639 5.216 -6.291 11.892 Atomic orbital electron populations 1.21711 0.92195 1.03377 1.02506 1.22507 0.95753 0.95522 0.85506 0.91827 1.22365 0.84143 1.01009 0.97485 1.43339 1.05015 1.62417 1.07216 1.19090 1.18791 1.22535 0.84568 0.87535 1.25362 0.96621 0.97535 0.94867 1.69774 1.45171 1.36867 0.97539 0.87017 0.78899 0.85381 0.78680 1.19890 1.21050 1.19000 1.20603 0.88041 0.83206 0.86168 1.90587 1.15423 1.52630 1.86468 1.22792 0.80203 1.02613 0.97114 1.88057 1.21515 1.75000 1.44841 0.90912 0.91527 0.91252 0.90876 0.91213 0.91474 0.86595 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.55 37.16 0.36 -1.46 15 2 C 0.07 1.12 3.30 -26.72 -0.09 1.04 15 3 H 0.06 1.08 8.10 -51.93 -0.42 0.66 15 4 C 0.07 1.54 5.07 -4.25 -0.02 1.52 15 5 N -0.46 -11.70 2.52 -115.50 -0.29 -11.99 15 6 C -0.32 -9.46 9.15 -14.93 -0.14 -9.59 15 7 H 0.11 3.50 7.82 -52.49 -0.41 3.09 15 8 C 0.06 1.76 5.30 -17.47 -0.09 1.66 15 9 N -0.86 -24.96 13.96 55.50 0.77 -24.19 15 10 Si 0.87 20.49 25.13 -169.99 -4.27 16.22 15 11 H -0.27 -5.82 6.68 56.52 0.38 -5.44 15 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 14 C 0.43 10.67 7.54 -11.57 -0.09 10.58 15 15 O -0.57 -16.18 16.69 5.55 0.09 -16.09 15 16 C 0.05 0.98 6.99 35.83 0.25 1.23 15 17 O -0.38 -6.74 10.50 -35.23 -0.37 -7.11 15 18 H 0.07 0.84 8.14 -51.93 -0.42 0.42 15 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.07 1.47 8.10 -51.93 -0.42 1.04 15 22 H 0.07 1.50 2.96 -51.93 -0.15 1.34 15 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 24 H 0.12 1.91 8.14 -51.93 -0.42 1.48 15 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 15 LS Contribution 212.60 15.07 3.20 3.20 Total: -1.00 -32.50 212.60 -3.36 -35.86 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.68 Total: -0.89 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 0.18 Total: 4.98 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.48 Total: -36.17 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.28 Total: -23.20 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.27 Total: 16.22 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -32.50 -3.36 -35.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080639.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.767 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds