Wall clock time and date at job start Mon Mar 30 2020 01:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.60134 * 2 1 4 4 C 1.53015 * 109.60819 * 120.33046 * 2 1 3 5 5 N 1.46092 * 109.92853 * 168.91667 * 4 2 1 6 6 C 1.37097 * 118.73201 * 161.61487 * 5 4 2 7 7 H 1.07999 * 120.00030 * 140.95952 * 6 5 4 8 8 C 1.38946 * 120.00135 * 320.96389 * 6 5 4 9 9 N 1.31410 * 120.00144 * 156.72145 * 8 6 5 10 10 Si 1.86806 * 120.00118 * 336.99074 * 8 6 5 11 11 H 1.48507 * 109.46758 * 95.32471 * 10 8 6 12 12 H 1.48492 * 109.47369 * 215.32796 * 10 8 6 13 13 H 1.48497 * 109.46816 * 335.33028 * 10 8 6 14 14 C 1.33869 * 122.53605 * 341.90103 * 5 4 2 15 15 O 1.21292 * 118.83051 * 181.62194 * 14 5 4 16 16 C 1.50334 * 122.34673 * 1.37809 * 14 5 4 17 17 O 1.42968 * 109.85421 * 344.54448 * 16 14 5 18 18 H 1.08996 * 109.46848 * 299.66493 * 1 2 3 19 19 H 1.08998 * 109.47424 * 59.67041 * 1 2 3 20 20 H 1.09003 * 109.46715 * 179.67612 * 1 2 3 21 21 H 1.09001 * 109.39939 * 48.77720 * 4 2 1 22 22 H 1.09002 * 109.39403 * 289.05752 * 4 2 1 23 23 H 0.97001 * 119.99873 * 179.97438 * 9 8 6 24 24 H 1.09000 * 109.54827 * 224.33244 * 16 14 5 25 25 H 1.09001 * 109.17652 * 104.52828 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0435 -0.7279 1.2441 5 7 3.4803 -0.9642 1.1253 6 6 4.1976 -1.2477 2.2587 7 1 4.9853 -1.9859 2.2288 8 6 3.9110 -0.5853 3.4460 9 7 4.2351 -1.1301 4.5971 10 14 3.0582 1.0763 3.4063 11 1 1.5957 0.8863 3.5806 12 1 3.5813 1.9275 4.5049 13 1 3.3197 1.7357 2.1018 14 6 4.1245 -0.9092 -0.0470 15 8 5.3137 -1.1462 -0.0725 16 6 3.4254 -0.5695 -1.3338 17 8 2.0106 -0.6847 -1.1628 18 1 -0.3633 0.5086 0.8930 19 1 -0.3634 0.5189 -0.8870 20 1 -0.3633 -1.0277 -0.0058 21 1 1.5268 -1.6824 1.3442 22 1 1.8488 -0.1182 2.1264 23 1 4.0353 -0.6675 5.4260 24 1 3.7524 -1.2524 -2.1178 25 1 3.6740 0.4533 -1.6171 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080639.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:36 Heat of formation + Delta-G solvation = -89.109578 kcal Electronic energy + Delta-G solvation = -11856.944191 eV Core-core repulsion = 9642.290666 eV Total energy + Delta-G solvation = -2214.653526 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.51520 -38.62504 -36.83021 -34.22292 -33.11388 -29.13608 -27.61036 -26.37610 -23.12439 -20.61303 -19.38854 -18.61449 -18.05485 -16.50426 -16.38172 -16.22268 -15.63161 -15.13573 -14.40899 -14.34110 -14.00760 -13.39770 -13.18201 -12.82076 -12.76544 -12.32892 -12.00008 -11.89822 -11.38313 -10.97274 -10.20805 -9.83206 -8.62106 -6.28492 1.10460 1.24315 1.37285 1.72780 2.08944 2.34423 2.73971 2.87806 3.48492 3.88716 3.98655 4.09739 4.26532 4.36242 4.56690 4.70908 4.84630 4.99550 5.28112 5.40651 5.83647 5.94855 6.44805 6.78945 7.16860 7.66736 8.55052 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.039237 B = 0.020891 C = 0.015461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.441566 B = 1339.991883 C = 1810.618804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.074 0.926 4 C 0.065 3.935 5 N -0.469 5.469 6 C -0.354 4.354 7 H 0.043 0.957 8 C 0.016 3.984 9 N -0.901 5.901 10 Si 0.945 3.055 11 H -0.227 1.227 12 H -0.281 1.281 13 H -0.260 1.260 14 C 0.418 3.582 15 O -0.622 6.622 16 C 0.067 3.933 17 O -0.371 6.371 18 H 0.090 0.910 19 H 0.090 0.910 20 H 0.071 0.929 21 H 0.076 0.924 22 H 0.070 0.930 23 H 0.284 0.716 24 H 0.140 0.860 25 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 6.592 -7.946 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.092 0.908 4 C -0.057 4.057 5 N -0.190 5.190 6 C -0.481 4.481 7 H 0.060 0.940 8 C -0.188 4.188 9 N -0.538 5.538 10 Si 0.767 3.233 11 H -0.152 1.152 12 H -0.207 1.207 13 H -0.184 1.184 14 C 0.208 3.792 15 O -0.508 6.508 16 C -0.012 4.012 17 O -0.289 6.289 18 H 0.109 0.891 19 H 0.109 0.891 20 H 0.090 0.910 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.157 0.843 25 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.234 6.349 -7.868 15.114 hybrid contribution 0.683 0.262 0.816 1.096 sum -10.552 6.611 -7.051 14.310 Atomic orbital electron populations 1.21767 0.88487 1.04332 1.04631 1.22744 0.98454 0.95028 0.83036 0.90771 1.22656 0.81207 1.01892 0.99943 1.43515 1.06904 1.62260 1.06357 1.18700 1.19263 1.22989 0.87172 0.93952 1.26220 0.97505 1.01445 0.93590 1.69879 1.46599 1.38728 0.98553 0.85881 0.80101 0.78436 0.78844 1.15183 1.20709 1.18420 1.21859 0.87916 0.81546 0.87920 1.90549 1.18065 1.54636 1.87554 1.22752 0.80126 1.04855 0.93492 1.88091 1.20547 1.75374 1.44922 0.89082 0.89121 0.90975 0.90620 0.91262 0.90621 0.84277 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.55 71.98 0.69 -2.09 15 2 C 0.07 1.98 3.30 30.60 0.10 2.08 15 3 H 0.07 2.13 8.10 -2.39 -0.02 2.11 15 4 C 0.07 2.60 5.07 86.46 0.44 3.04 15 5 N -0.47 -24.11 2.52 -638.22 -1.61 -25.71 15 6 C -0.35 -21.69 9.15 84.04 0.77 -20.92 15 7 H 0.04 3.05 7.82 -2.91 -0.02 3.02 15 8 C 0.02 0.91 5.30 84.93 0.45 1.36 15 9 N -0.90 -53.93 13.96 21.66 0.30 -53.63 15 10 Si 0.95 41.14 25.13 68.60 1.72 42.86 15 11 H -0.23 -8.31 6.68 99.48 0.66 -7.64 15 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 15 13 H -0.26 -11.05 7.11 99.48 0.71 -10.34 15 14 C 0.42 20.69 7.54 87.68 0.66 21.35 15 15 O -0.62 -36.73 16.69 -3.07 -0.05 -36.78 15 16 C 0.07 2.31 6.99 71.12 0.50 2.80 15 17 O -0.37 -11.89 10.50 -148.98 -1.56 -13.45 15 18 H 0.09 1.58 8.14 -2.39 -0.02 1.56 15 19 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 21 H 0.08 2.92 8.10 -2.39 -0.02 2.90 15 22 H 0.07 2.74 2.96 -2.39 -0.01 2.73 15 23 H 0.28 15.35 8.31 -92.71 -0.77 14.58 15 24 H 0.14 4.17 8.14 -2.39 -0.02 4.15 15 25 H 0.11 3.04 8.14 -2.39 -0.02 3.02 15 Total: -1.00 -74.99 212.60 3.55 -71.44 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.14 Total: 7.67 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 3.60 Total: 7.61 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -1.31 Total: -79.35 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -1.62 Total: -50.24 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.72 Total: 42.86 kcal Total: -74.99 3.55 -71.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080639.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.672 kcal (2) G-P(sol) polarization free energy of solvation -74.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds