Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.61907 * 2 1 4 4 C 1.54088 * 110.66399 * 237.23892 * 2 1 3 5 5 O 1.45696 * 104.01107 * 241.71946 * 4 2 1 6 6 C 1.33798 * 109.47217 * 359.77533 * 5 4 2 7 7 O 1.21505 * 123.07213 * 180.02562 * 6 5 4 8 8 N 1.34003 * 113.85170 * 359.97438 * 6 5 4 9 9 C 1.37192 * 125.55785 * 179.97438 * 8 6 5 10 10 H 1.07997 * 120.00512 * 146.20162 * 9 8 6 11 11 C 1.38891 * 119.99904 * 326.19736 * 9 8 6 12 12 N 1.31469 * 119.99666 * 146.64689 * 11 9 8 13 13 Si 1.86799 * 120.00108 * 326.93111 * 11 9 8 14 14 H 1.48500 * 109.47184 * 269.72212 * 13 11 9 15 15 H 1.48498 * 109.47273 * 29.72073 * 13 11 9 16 16 H 1.48498 * 109.47027 * 149.72307 * 13 11 9 17 17 H 1.09004 * 109.47021 * 297.18064 * 1 2 3 18 18 H 1.09001 * 109.47477 * 57.17781 * 1 2 3 19 19 H 1.08994 * 109.47396 * 177.18255 * 1 2 3 20 20 H 1.09002 * 109.46838 * 182.82133 * 3 2 1 21 21 H 1.09002 * 109.46631 * 302.81743 * 3 2 1 22 22 H 1.08999 * 109.47032 * 62.82201 * 3 2 1 23 23 H 1.09006 * 110.71708 * 122.99435 * 4 2 1 24 24 H 1.09001 * 110.44961 * 0.32187 * 4 2 1 25 25 H 0.96994 * 120.00123 * 354.82446 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0688 1.4321 0.0000 4 6 2.0737 -0.7802 -1.2124 5 8 2.8248 -1.8778 -0.6176 6 6 2.7624 -1.7898 0.7161 7 8 3.3054 -2.5832 1.4590 8 7 2.0471 -0.7461 1.1573 9 6 1.8272 -0.4291 2.4739 10 1 1.7491 0.6052 2.7746 11 6 1.7050 -1.4384 3.4201 12 7 2.1374 -1.2454 4.6466 13 14 0.9336 -3.0729 2.9481 14 1 -0.5305 -3.0175 3.1900 15 1 1.1877 -3.3433 1.5102 16 1 1.5302 -4.1572 3.7687 17 1 -0.3633 0.4695 0.9142 18 1 -0.3634 0.5570 -0.8636 19 1 -0.3634 -1.0263 -0.0505 20 1 3.1574 1.4106 -0.0506 21 1 1.6754 1.9682 -0.8637 22 1 1.7574 1.9374 0.9142 23 1 2.7293 -0.1503 -1.8138 24 1 1.2525 -1.1632 -1.8182 25 1 2.6087 -0.4282 4.8717 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039080641.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -88.339001 kcal Electronic energy + Delta-G solvation = -12088.954168 eV Core-core repulsion = 9874.334057 eV Total energy + Delta-G solvation = -2214.620111 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.51523 -38.13646 -37.19192 -34.77360 -32.69003 -28.28321 -27.60874 -26.87466 -22.81940 -21.53132 -20.19117 -17.87878 -17.63109 -17.08510 -16.17518 -15.75749 -15.09284 -14.75057 -14.63563 -14.59004 -13.82235 -13.30254 -12.97221 -12.61613 -12.40483 -12.24458 -12.03007 -11.89887 -11.33860 -10.95573 -10.84330 -9.96317 -9.02362 -6.19851 1.26285 1.46234 1.57784 2.04865 2.10163 2.49034 2.81071 3.04634 3.43783 3.89144 3.94270 4.39230 4.54504 4.59497 4.77494 4.83686 4.94050 5.07527 5.27481 5.40167 5.67564 6.08581 6.44630 6.81942 7.21214 7.77569 8.37774 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.044411 B = 0.021193 C = 0.018707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.328526 B = 1320.843773 C = 1496.396310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.084 3.916 3 C -0.134 4.134 4 C 0.042 3.958 5 O -0.360 6.360 6 C 0.579 3.421 7 O -0.599 6.599 8 N -0.467 5.467 9 C -0.407 4.407 10 H 0.080 0.920 11 C 0.019 3.981 12 N -0.880 5.880 13 Si 1.091 2.909 14 H -0.269 1.269 15 H -0.288 1.288 16 H -0.301 1.301 17 H 0.055 0.945 18 H 0.110 0.890 19 H 0.047 0.953 20 H 0.046 0.954 21 H 0.110 0.890 22 H 0.048 0.952 23 H 0.131 0.869 24 H 0.130 0.870 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 5.632 -13.118 15.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.001 4.001 3 C -0.192 4.192 4 C -0.032 4.032 5 O -0.271 6.271 6 C 0.334 3.666 7 O -0.492 6.492 8 N -0.202 5.202 9 C -0.532 4.532 10 H 0.098 0.902 11 C -0.190 4.190 12 N -0.512 5.512 13 Si 0.918 3.082 14 H -0.196 1.196 15 H -0.215 1.215 16 H -0.228 1.228 17 H 0.074 0.926 18 H 0.129 0.871 19 H 0.066 0.934 20 H 0.065 0.935 21 H 0.129 0.871 22 H 0.067 0.933 23 H 0.149 0.851 24 H 0.148 0.852 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.346 3.706 -12.267 13.885 hybrid contribution 0.802 1.497 0.044 1.699 sum -4.544 5.203 -12.223 14.040 Atomic orbital electron populations 1.21999 0.91297 1.02394 1.03943 1.22275 0.97280 0.94896 0.85609 1.21957 1.00462 0.93161 1.03600 1.24824 0.97385 0.86198 0.94759 1.87078 1.70667 1.50576 1.18767 1.18697 0.81185 0.85357 0.81316 1.90727 1.55217 1.47817 1.55471 1.43953 1.44762 1.25447 1.06055 1.19661 1.58563 0.94500 0.80477 0.90249 1.27014 0.94222 1.05127 0.92589 1.70922 1.31103 1.26862 1.22354 0.83299 0.75257 0.73888 0.75740 1.19573 1.21501 1.22752 0.92587 0.87104 0.93397 0.93466 0.87103 0.93255 0.85084 0.85244 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 8.52 71.98 0.61 -3.29 15 2 C 0.08 2.82 1.13 3.86 0.00 2.82 15 3 C -0.13 -3.72 8.51 71.98 0.61 -3.11 15 4 C 0.04 1.20 7.52 72.35 0.54 1.74 15 5 O -0.36 -15.65 11.09 -47.56 -0.53 -16.18 15 6 C 0.58 30.90 6.79 129.91 0.88 31.78 15 7 O -0.60 -37.53 13.95 19.67 0.27 -37.25 15 8 N -0.47 -22.86 2.19 -720.23 -1.58 -24.44 15 9 C -0.41 -22.71 9.41 84.01 0.79 -21.92 15 10 H 0.08 4.48 7.67 -2.91 -0.02 4.46 15 11 C 0.02 1.12 4.83 84.90 0.41 1.53 15 12 N -0.88 -54.88 13.69 21.66 0.30 -54.59 15 13 Si 1.09 58.50 26.43 68.60 1.81 60.32 15 14 H -0.27 -12.72 7.11 99.48 0.71 -12.02 15 15 H -0.29 -15.66 5.48 99.48 0.55 -15.11 15 16 H -0.30 -16.78 7.11 99.48 0.71 -16.07 15 17 H 0.05 1.78 8.02 -2.38 -0.02 1.76 15 18 H 0.11 1.96 8.14 -2.39 -0.02 1.94 15 19 H 0.05 1.43 8.14 -2.39 -0.02 1.41 15 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.05 1.55 7.68 -2.39 -0.02 1.54 15 23 H 0.13 2.70 7.74 -2.38 -0.02 2.68 15 24 H 0.13 2.71 7.73 -2.39 -0.02 2.69 15 25 H 0.27 16.49 8.73 -92.71 -0.81 15.68 15 Total: -1.00 -75.42 213.90 5.11 -70.32 By element: Atomic # 1 Polarization: -8.71 SS G_CDS: 0.98 Total: -7.73 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 3.86 Total: 9.56 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.28 Total: -79.03 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -0.25 Total: -53.43 kcal Atomic # 14 Polarization: 58.50 SS G_CDS: 1.81 Total: 60.32 kcal Total: -75.42 5.11 -70.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039080641.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.023 kcal (2) G-P(sol) polarization free energy of solvation -75.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds