Wall clock time and date at job start Mon Mar 30 2020 02:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31586 * 1 3 3 Si 1.86796 * 119.99911 * 2 1 4 4 H 1.48498 * 109.47428 * 240.00369 * 3 2 1 5 5 H 1.48506 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46923 * 120.00447 * 3 2 1 7 7 C 1.38635 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99962 * 179.97438 * 7 2 1 9 9 O 1.34935 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.42898 * 116.99841 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.46729 * 179.97438 * 10 9 7 12 12 C 1.53124 * 109.52564 * 294.68364 * 11 10 9 13 13 C 1.53035 * 109.27794 * 182.44326 * 12 11 10 14 14 N 1.46844 * 109.52494 * 59.18054 * 13 12 11 15 15 C 1.46854 * 111.19703 * 298.25280 * 14 13 12 16 16 C 1.53037 * 109.51886 * 61.74789 * 15 14 13 17 17 H 0.96994 * 120.00044 * 359.97438 * 1 2 3 18 18 H 1.08998 * 109.46923 * 59.99883 * 10 9 7 19 19 H 1.08999 * 109.47163 * 299.99783 * 10 9 7 20 20 H 1.08999 * 109.58045 * 54.84441 * 11 10 9 21 21 H 1.08999 * 109.50059 * 302.38272 * 12 11 10 22 22 H 1.08993 * 109.49981 * 62.49919 * 12 11 10 23 23 H 1.09002 * 109.46466 * 299.16376 * 13 12 11 24 24 H 1.09002 * 109.46192 * 179.19659 * 13 12 11 25 25 H 1.00899 * 111.00532 * 62.35261 * 14 13 12 26 26 H 1.08994 * 109.46310 * 301.73015 * 15 14 13 27 27 H 1.09004 * 109.45830 * 181.75702 * 15 14 13 28 28 H 1.09000 * 109.50480 * 180.88135 * 16 15 14 29 29 H 1.08992 * 109.50737 * 60.75564 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6965 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6963 1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0891 -1.2006 -0.0010 9 8 1.3344 -2.3692 -0.0005 10 6 2.1128 -3.5676 -0.0017 11 6 1.1808 -4.7809 -0.0009 12 6 0.3926 -4.8199 1.3114 13 6 -0.4925 -6.0682 1.3322 14 7 0.3467 -7.2669 1.2087 15 6 1.0771 -7.2747 -0.0653 16 6 2.0091 -6.0625 -0.1278 17 1 -0.4850 0.8400 0.0004 18 1 2.7423 -3.5928 0.8878 19 1 2.7409 -3.5920 -0.8922 20 1 0.4883 -4.7102 -0.8397 21 1 1.0861 -4.8514 2.1516 22 1 -0.2318 -3.9297 1.3873 23 1 -1.1950 -6.0293 0.4997 24 1 -1.0444 -6.1064 2.2714 25 1 0.9807 -7.3465 1.9895 26 1 0.3672 -7.2301 -0.8912 27 1 1.6653 -8.1893 -0.1410 28 1 2.5395 -6.0600 -1.0800 29 1 2.7280 -6.1136 0.6898 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051815070.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:44 Heat of formation + Delta-G solvation = -76.691995 kcal Electronic energy + Delta-G solvation = -11491.349649 eV Core-core repulsion = 9413.067684 eV Total energy + Delta-G solvation = -2078.281964 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.02442 -38.00874 -34.29640 -33.05299 -31.74881 -27.72791 -26.11337 -23.78493 -22.93252 -21.16312 -19.64670 -17.43047 -17.00191 -15.99809 -15.88841 -15.57071 -15.37439 -14.95838 -14.12213 -13.91410 -13.50236 -13.11617 -13.02406 -12.71501 -12.27495 -12.17063 -11.97033 -11.71013 -11.52977 -11.30956 -11.08133 -10.18421 -9.32809 -8.21325 -5.91842 1.36674 1.44842 1.52077 2.30445 3.11077 3.37943 3.56262 3.76577 4.02395 4.18194 4.30848 4.38004 4.42992 4.58651 4.68168 4.80185 4.85392 4.96965 5.02275 5.08470 5.11015 5.21182 5.33787 5.42577 6.06010 6.17202 6.51573 7.21089 8.02308 9.03364 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.087696 B = 0.008658 C = 0.008169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.208964 B = 3233.190706 C = 3426.896648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.041 4.041 3 Si 1.007 2.993 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.386 4.386 8 H 0.069 0.931 9 O -0.333 6.333 10 C 0.072 3.928 11 C -0.079 4.079 12 C -0.139 4.139 13 C 0.066 3.934 14 N -0.684 5.684 15 C 0.062 3.938 16 C -0.139 4.139 17 H 0.262 0.738 18 H 0.022 0.978 19 H 0.022 0.978 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.039 0.961 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.347 0.653 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 -11.631 1.532 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.234 4.234 3 Si 0.829 3.171 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.464 4.464 8 H 0.087 0.913 9 O -0.249 6.249 10 C -0.005 4.005 11 C -0.097 4.097 12 C -0.178 4.178 13 C -0.064 4.064 14 N -0.312 5.312 15 C -0.068 4.068 16 C -0.179 4.179 17 H 0.070 0.930 18 H 0.040 0.960 19 H 0.040 0.960 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.058 0.942 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.165 0.835 26 H 0.087 0.913 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.902 -11.969 1.298 12.384 hybrid contribution 1.154 1.801 0.072 2.141 sum 4.057 -10.167 1.370 11.032 Atomic orbital electron populations 1.70189 1.07609 1.27391 1.53108 1.26256 0.96783 1.02058 0.98284 0.84812 0.77262 0.75764 0.79312 1.18823 1.20170 1.18835 1.21313 0.90802 0.83818 1.50502 0.91316 1.85569 1.34016 1.11839 1.93510 1.22438 0.93799 0.86712 0.97544 1.21089 0.97041 0.93375 0.98224 1.22106 0.99334 0.99606 0.96752 1.21944 0.95234 0.86540 1.02678 1.60747 1.27052 1.38225 1.05200 1.22051 0.95540 0.96811 0.92350 1.22204 0.98587 0.94033 1.03036 0.92970 0.96029 0.95966 0.92727 0.92325 0.94235 0.91615 0.89596 0.83489 0.91339 0.88139 0.90705 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.08 13.68 21.61 0.30 -60.78 15 2 C -0.04 -2.46 5.49 84.82 0.47 -1.99 15 3 Si 1.01 45.91 29.55 68.60 2.03 47.94 15 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 15 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 6 H -0.26 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.39 -23.68 9.89 67.91 0.67 -23.01 15 8 H 0.07 3.93 7.77 -2.91 -0.02 3.91 15 9 O -0.33 -20.20 9.38 -82.05 -0.77 -20.97 15 10 C 0.07 3.34 5.40 71.98 0.39 3.73 15 11 C -0.08 -2.92 2.49 -10.71 -0.03 -2.95 15 12 C -0.14 -4.96 5.23 30.65 0.16 -4.80 15 13 C 0.07 1.84 6.55 86.33 0.57 2.41 15 14 N -0.68 -16.13 6.87 -514.00 -3.53 -19.66 15 15 C 0.06 1.39 6.55 86.32 0.57 1.95 15 16 C -0.14 -3.72 5.36 30.65 0.16 -3.55 15 17 H 0.26 15.80 8.31 -92.71 -0.77 15.03 15 18 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 19 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 20 H 0.05 2.21 8.14 -2.39 -0.02 2.19 15 21 H 0.06 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.04 1.74 7.90 -2.39 -0.02 1.72 15 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 15 24 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.35 7.17 8.86 -89.69 -0.79 6.38 15 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 15 27 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 15 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 Total: -1.00 -71.61 242.04 1.30 -70.31 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.32 Total: 11.37 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: 2.96 Total: -28.21 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.23 Total: -80.44 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.77 Total: -20.97 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.61 1.30 -70.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051815070.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.385 kcal (2) G-P(sol) polarization free energy of solvation -71.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds