Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 109.47451 * 34.99922 * 10 9 7 12 12 C 1.53006 * 109.46802 * 274.99978 * 10 9 7 13 13 C 1.53000 * 109.46981 * 300.00003 * 12 10 9 14 14 C 1.52994 * 109.47517 * 300.00271 * 13 12 10 15 15 C 1.53006 * 109.47216 * 59.99873 * 14 13 12 16 16 C 1.52999 * 109.46890 * 300.00072 * 15 14 13 17 17 H 1.08998 * 109.47453 * 300.00168 * 16 15 14 18 18 O 1.42896 * 109.46833 * 179.97438 * 16 15 14 19 19 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 21 21 H 1.08996 * 109.47059 * 60.00240 * 12 10 9 22 22 H 1.08998 * 109.46686 * 180.02562 * 12 10 9 23 23 H 1.08998 * 109.47062 * 180.02562 * 13 12 10 24 24 H 1.09007 * 109.47183 * 60.00604 * 13 12 10 25 25 H 1.09007 * 109.47166 * 300.00344 * 14 13 12 26 26 H 1.09002 * 109.47707 * 180.02562 * 14 13 12 27 27 H 1.08996 * 109.47059 * 180.02562 * 15 14 13 28 28 H 1.08998 * 109.46686 * 60.00437 * 15 14 13 29 29 H 0.96701 * 114.00052 * 60.00176 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9689 -3.5474 0.6024 12 6 2.4221 -4.0431 -1.4215 13 6 1.1438 -4.1966 -2.2481 14 6 0.2666 -5.2887 -1.6328 15 6 -0.0973 -4.9024 -0.1977 16 6 1.1810 -4.7489 0.6288 17 1 1.7261 -5.6928 0.6338 18 8 0.8412 -4.3875 1.9689 19 1 -0.4850 0.8400 -0.0004 20 1 0.3556 -2.3880 0.0068 21 1 3.0470 -3.2650 -1.8599 22 1 2.9668 -4.9872 -1.4165 23 1 1.4031 -4.4723 -3.2703 24 1 0.5988 -3.2526 -2.2531 25 1 0.8117 -6.2327 -1.6277 26 1 -0.6439 -5.3985 -2.2219 27 1 -0.7218 -5.6806 0.2408 28 1 -0.6423 -3.9585 -0.2028 29 1 0.2845 -5.0356 2.4219 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052013012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = -55.012506 kcal Electronic energy + Delta-G solvation = -11956.501680 eV Core-core repulsion = 9879.159809 eV Total energy + Delta-G solvation = -2077.341871 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.65429 -35.07493 -33.46409 -30.89918 -29.21926 -27.67767 -23.52222 -21.97072 -21.49048 -18.43756 -17.13919 -16.65724 -14.93094 -14.65739 -13.92338 -13.72975 -13.40694 -12.91621 -12.29332 -12.07452 -11.49996 -11.34388 -11.02596 -10.75645 -10.70029 -10.17698 -10.13942 -10.01896 -9.67023 -9.35295 -9.18350 -8.77415 -6.80817 -5.65433 -2.91646 3.49802 3.54830 3.56737 4.68451 4.77524 5.23321 5.26311 5.51094 5.67767 5.70821 5.81086 5.92424 5.94841 6.11347 6.15320 6.30842 6.40795 6.52798 6.74553 6.82563 6.91718 6.99308 7.14907 7.79494 8.23528 8.53773 9.64932 10.24615 10.60375 11.57729 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049841 B = 0.012870 C = 0.012037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.656181 B = 2175.034662 C = 2325.575724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.068 0.932 9 N -0.710 5.710 10 C 0.182 3.818 11 H 0.050 0.950 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.111 4.111 15 C -0.150 4.150 16 C 0.101 3.899 17 H 0.043 0.957 18 O -0.551 6.551 19 H 0.253 0.747 20 H 0.385 0.615 21 H 0.065 0.935 22 H 0.043 0.957 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 -10.927 -1.636 11.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.362 4.362 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.071 3.929 11 H 0.068 0.932 12 C -0.172 4.172 13 C -0.153 4.153 14 C -0.148 4.148 15 C -0.188 4.188 16 C 0.041 3.959 17 H 0.061 0.939 18 O -0.354 6.354 19 H 0.063 0.937 20 H 0.221 0.779 21 H 0.084 0.916 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.554 -10.243 -1.764 10.509 hybrid contribution -0.214 0.413 0.078 0.472 sum 1.341 -9.830 -1.686 10.063 Atomic orbital electron populations 1.69660 1.05044 1.25352 1.58300 1.24693 0.95479 0.97482 1.03532 0.86215 0.78655 0.84156 0.77349 1.21929 1.21906 1.20893 1.19263 0.90923 0.84294 1.41743 0.91396 1.42305 1.05728 0.99195 1.87997 1.20174 0.94029 0.86283 0.92425 0.93248 1.22132 0.97073 0.99592 0.98445 1.21439 0.96983 0.99559 0.97308 1.21429 0.99350 0.98406 0.95633 1.22216 0.98422 1.02166 0.95990 1.22121 0.94825 0.97035 0.81915 0.93871 1.86748 1.72567 1.49799 1.26250 0.93722 0.77939 0.91630 0.93844 0.93449 0.90373 0.92934 0.92580 0.92988 0.90189 0.79431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.03 13.06 55.49 0.72 -28.30 15 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 15 3 Si 0.90 23.09 29.55 -169.99 -5.02 18.07 15 4 H -0.29 -7.37 7.11 56.52 0.40 -6.97 15 5 H -0.29 -7.53 7.11 56.52 0.40 -7.13 15 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 15 7 C -0.23 -6.64 9.93 -15.06 -0.15 -6.78 15 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 15 9 N -0.71 -18.46 4.14 -53.42 -0.22 -18.68 15 10 C 0.18 3.84 2.79 -67.92 -0.19 3.65 15 11 H 0.05 1.11 8.08 -51.93 -0.42 0.69 15 12 C -0.13 -2.42 5.61 -26.73 -0.15 -2.57 15 13 C -0.12 -2.00 5.76 -26.73 -0.15 -2.16 15 14 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 15 15 C -0.15 -2.46 5.37 -26.73 -0.14 -2.60 15 16 C 0.10 1.79 3.20 -26.73 -0.09 1.71 15 17 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 18 O -0.55 -10.43 13.18 -35.23 -0.46 -10.90 15 19 H 0.25 7.61 8.31 -40.82 -0.34 7.27 15 20 H 0.39 10.63 6.06 -40.82 -0.25 10.39 15 21 H 0.06 1.29 8.14 -51.93 -0.42 0.87 15 22 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.08 1.62 7.60 -51.93 -0.39 1.23 15 25 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 28 H 0.08 1.57 6.51 -51.93 -0.34 1.23 15 29 H 0.36 4.85 9.08 45.56 0.41 5.26 15 LS Contribution 235.81 15.07 3.55 3.55 Total: -1.00 -31.98 235.81 -6.05 -38.03 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -3.49 Total: 9.39 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.13 Total: -11.16 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.50 Total: -46.99 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: -0.46 Total: -10.90 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.98 -6.05 -38.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.981 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds