Wall clock time and date at job start Mon Mar 30 2020 02:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 109.47451 * 34.99922 * 10 9 7 12 12 C 1.53006 * 109.46802 * 274.99978 * 10 9 7 13 13 C 1.53000 * 109.46981 * 300.00003 * 12 10 9 14 14 C 1.52994 * 109.47517 * 300.00271 * 13 12 10 15 15 C 1.53006 * 109.47216 * 59.99873 * 14 13 12 16 16 C 1.52999 * 109.46890 * 300.00072 * 15 14 13 17 17 H 1.08998 * 109.47453 * 300.00168 * 16 15 14 18 18 O 1.42896 * 109.46833 * 179.97438 * 16 15 14 19 19 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 20 20 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 21 21 H 1.08996 * 109.47059 * 60.00240 * 12 10 9 22 22 H 1.08998 * 109.46686 * 180.02562 * 12 10 9 23 23 H 1.08998 * 109.47062 * 180.02562 * 13 12 10 24 24 H 1.09007 * 109.47183 * 60.00604 * 13 12 10 25 25 H 1.09007 * 109.47166 * 300.00344 * 14 13 12 26 26 H 1.09002 * 109.47707 * 180.02562 * 14 13 12 27 27 H 1.08996 * 109.47059 * 180.02562 * 15 14 13 28 28 H 1.08998 * 109.46686 * 60.00437 * 15 14 13 29 29 H 0.96701 * 114.00052 * 60.00176 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9689 -3.5474 0.6024 12 6 2.4221 -4.0431 -1.4215 13 6 1.1438 -4.1966 -2.2481 14 6 0.2666 -5.2887 -1.6328 15 6 -0.0973 -4.9024 -0.1977 16 6 1.1810 -4.7489 0.6288 17 1 1.7261 -5.6928 0.6338 18 8 0.8412 -4.3875 1.9689 19 1 -0.4850 0.8400 -0.0004 20 1 0.3556 -2.3880 0.0068 21 1 3.0470 -3.2650 -1.8599 22 1 2.9668 -4.9872 -1.4165 23 1 1.4031 -4.4723 -3.2703 24 1 0.5988 -3.2526 -2.2531 25 1 0.8117 -6.2327 -1.6277 26 1 -0.6439 -5.3985 -2.2219 27 1 -0.7218 -5.6806 0.2408 28 1 -0.6423 -3.9585 -0.2028 29 1 0.2845 -5.0356 2.4219 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052013012.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:31 Heat of formation + Delta-G solvation = -79.095109 kcal Electronic energy + Delta-G solvation = -11957.545980 eV Core-core repulsion = 9879.159809 eV Total energy + Delta-G solvation = -2078.386171 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.12787 -36.56743 -35.37076 -32.79836 -30.68285 -29.40975 -25.61946 -23.38318 -22.91510 -20.01311 -19.19967 -18.06817 -16.65367 -16.43513 -15.57301 -15.29624 -15.01684 -14.58760 -13.82750 -13.59241 -13.11406 -13.05540 -12.80778 -12.49707 -12.35213 -12.12302 -11.83546 -11.54849 -11.30974 -10.95877 -10.86254 -10.53415 -8.91787 -7.90259 -5.15624 1.45166 1.47585 1.55778 2.58082 3.39198 3.48661 3.86395 3.94502 4.16806 4.22854 4.42935 4.48285 4.55481 4.72309 4.78605 4.92958 5.06221 5.14155 5.36124 5.37865 5.39892 5.50454 5.54692 5.71295 6.32383 7.08845 7.38296 8.18616 8.41857 9.33821 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049841 B = 0.012870 C = 0.012037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.656181 B = 2175.034662 C = 2325.575724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.166 3.834 11 H 0.031 0.969 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.145 4.145 16 C 0.104 3.896 17 H 0.082 0.918 18 O -0.582 6.582 19 H 0.248 0.752 20 H 0.374 0.626 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.778 -12.798 -1.969 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.362 5.362 10 C 0.057 3.943 11 H 0.049 0.951 12 C -0.164 4.164 13 C -0.151 4.151 14 C -0.141 4.141 15 C -0.183 4.183 16 C 0.045 3.955 17 H 0.099 0.901 18 O -0.389 6.389 19 H 0.057 0.943 20 H 0.207 0.793 21 H 0.060 0.940 22 H 0.100 0.900 23 H 0.088 0.912 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.296 -12.167 -2.096 12.558 hybrid contribution -0.401 0.906 0.204 1.011 sum 1.895 -11.261 -1.892 11.575 Atomic orbital electron populations 1.69827 1.06538 1.25685 1.60248 1.25503 0.96380 1.00881 1.04489 0.85166 0.77606 0.79809 0.77378 1.21372 1.22291 1.19759 1.19640 0.91216 0.85695 1.40012 0.91255 1.42455 1.05347 1.00324 1.88100 1.20531 0.93692 0.85753 0.94290 0.95078 1.21996 0.97640 1.00618 0.96168 1.21401 0.96395 0.98536 0.98816 1.21418 0.99828 0.98536 0.94362 1.22167 0.97790 1.01166 0.97204 1.22108 0.95209 0.96746 0.81452 0.90067 1.86680 1.73439 1.51729 1.27062 0.94284 0.79255 0.93967 0.89952 0.91153 0.94945 0.89597 0.91250 0.89626 0.94406 0.76710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.14 13.06 21.65 0.28 -61.86 15 2 C -0.08 -4.87 5.50 84.86 0.47 -4.41 15 3 Si 0.97 48.34 29.55 68.60 2.03 50.36 15 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 15 5 H -0.30 -14.80 7.11 99.48 0.71 -14.10 15 6 H -0.27 -12.92 7.11 99.48 0.71 -12.22 15 7 C -0.23 -13.70 9.93 84.03 0.83 -12.86 15 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 15 9 N -0.72 -38.37 4.14 -322.92 -1.34 -39.70 15 10 C 0.17 6.94 2.79 44.99 0.13 7.07 15 11 H 0.03 1.39 8.08 -2.39 -0.02 1.37 15 12 C -0.12 -4.36 5.61 30.60 0.17 -4.19 15 13 C -0.11 -3.77 5.76 30.59 0.18 -3.60 15 14 C -0.10 -2.77 5.92 30.59 0.18 -2.59 15 15 C -0.15 -4.44 5.37 30.60 0.16 -4.27 15 16 C 0.10 3.46 3.20 30.59 0.10 3.56 15 17 H 0.08 2.13 8.14 -2.39 -0.02 2.11 15 18 O -0.58 -21.31 13.18 -148.98 -1.96 -23.27 15 19 H 0.25 15.38 8.31 -92.71 -0.77 14.61 15 20 H 0.37 21.42 6.06 -92.71 -0.56 20.86 15 21 H 0.04 1.64 8.14 -2.39 -0.02 1.63 15 22 H 0.08 2.26 8.14 -2.39 -0.02 2.25 15 23 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 24 H 0.03 1.36 7.60 -2.38 -0.02 1.34 15 25 H 0.09 1.79 8.14 -2.38 -0.02 1.77 15 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 27 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 28 H 0.04 1.48 6.51 -2.39 -0.02 1.47 15 29 H 0.38 9.52 9.08 -74.06 -0.67 8.85 15 Total: -1.00 -70.57 235.81 1.13 -69.43 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.10 Total: 26.32 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 2.22 Total: -21.29 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -1.05 Total: -101.56 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.96 Total: -23.27 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal Total: -70.57 1.13 -69.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013012.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.661 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds