Wall clock time and date at job start Mon Mar 30 2020 02:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99668 * 2 1 4 4 H 1.48504 * 109.47389 * 239.99826 * 3 2 1 5 5 H 1.48497 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47026 * 120.00260 * 3 2 1 7 7 C 1.38809 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00470 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99792 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 324.99342 * 10 9 7 12 12 C 1.52997 * 109.47473 * 84.99599 * 10 9 7 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47233 * 299.99657 * 13 12 10 15 15 C 1.52997 * 109.46817 * 60.00194 * 14 13 12 16 16 C 1.52999 * 109.46944 * 204.99944 * 10 9 7 17 17 H 1.09002 * 109.46716 * 299.99651 * 16 10 9 18 18 O 1.42900 * 109.47616 * 59.99558 * 16 10 9 19 19 H 0.97005 * 120.00673 * 0.02562 * 1 2 3 20 20 H 0.96994 * 120.00233 * 359.97438 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 22 22 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 23 23 H 1.08992 * 109.47399 * 59.99823 * 13 12 10 24 24 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 25 25 H 1.08993 * 109.47662 * 180.02562 * 14 13 12 26 26 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 27 27 H 1.09002 * 109.47153 * 60.00231 * 15 14 13 28 28 H 1.09001 * 109.47289 * 180.02562 * 15 14 13 29 29 H 0.96696 * 114.00289 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9687 -3.5505 -0.5890 12 6 2.4221 -4.0355 1.4375 13 6 3.1877 -5.3602 1.4373 14 6 2.3110 -6.4559 0.8276 15 6 1.9470 -6.0771 -0.6093 16 6 1.1809 -4.7521 -0.6091 17 1 0.2703 -4.8583 -0.0195 18 8 0.8409 -4.3983 -1.9512 19 1 -0.4851 0.8400 -0.0004 20 1 0.3556 -2.3881 0.0005 21 1 1.5115 -4.1418 2.0270 22 1 3.0471 -3.2551 1.8717 23 1 4.0983 -5.2535 0.8479 24 1 3.4467 -5.6303 2.4611 25 1 2.8562 -7.3997 0.8279 26 1 1.4003 -6.5625 1.4170 27 1 2.8577 -5.9704 -1.1988 28 1 1.3221 -6.8575 -1.0436 29 1 0.2841 -5.0489 -2.4004 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052013015.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:33 Heat of formation + Delta-G solvation = -83.310403 kcal Electronic energy + Delta-G solvation = -11732.190865 eV Core-core repulsion = 9653.621905 eV Total energy + Delta-G solvation = -2078.568960 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.00436 -36.52455 -35.77471 -33.02721 -30.64336 -29.23877 -25.64310 -23.35189 -22.43565 -20.84754 -19.12382 -18.09163 -17.04421 -16.08839 -15.60802 -15.27728 -14.66345 -14.61825 -14.12335 -13.60781 -13.56759 -12.94836 -12.79490 -12.41454 -12.25420 -12.08175 -11.90744 -11.59137 -11.52582 -10.95782 -10.89755 -10.66315 -8.98420 -7.92975 -5.20756 1.44767 1.49136 1.55077 2.56386 3.35479 3.44443 3.72991 3.89517 4.18729 4.27714 4.36340 4.40462 4.55852 4.62695 4.71659 4.95744 5.04907 5.21585 5.25611 5.27551 5.36005 5.47488 5.48097 5.62395 6.28832 7.05430 7.33930 8.11401 8.35061 9.30896 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058000 B = 0.011199 C = 0.010090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.642064 B = 2499.693764 C = 2774.442630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.175 3.825 11 H 0.031 0.969 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.111 4.111 15 C -0.138 4.138 16 C 0.101 3.899 17 H 0.046 0.954 18 O -0.581 6.581 19 H 0.250 0.750 20 H 0.370 0.630 21 H 0.050 0.950 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.357 -13.912 1.038 14.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.067 3.933 11 H 0.049 0.951 12 C -0.166 4.166 13 C -0.152 4.152 14 C -0.148 4.148 15 C -0.176 4.176 16 C 0.042 3.958 17 H 0.064 0.936 18 O -0.387 6.387 19 H 0.059 0.941 20 H 0.202 0.798 21 H 0.069 0.931 22 H 0.062 0.938 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.868 -13.264 1.172 14.177 hybrid contribution -0.495 0.812 -0.179 0.967 sum 4.373 -12.452 0.993 13.235 Atomic orbital electron populations 1.69827 1.06663 1.26013 1.59815 1.25576 0.96433 1.01117 1.03991 0.85193 0.77201 0.79109 0.78168 1.20618 1.21927 1.20179 1.19587 0.91223 0.85529 1.40815 0.91143 1.42475 1.05240 1.00874 1.88475 1.20495 0.93715 0.84900 0.94189 0.95096 1.22068 0.99778 0.97479 0.97302 1.21550 0.98370 0.93637 1.01648 1.21487 1.00183 0.98596 0.94582 1.22190 1.00975 0.95748 0.98660 1.22118 0.96627 0.94305 0.82761 0.93589 1.86679 1.73421 1.51277 1.27361 0.94085 0.79822 0.93084 0.93830 0.92054 0.90490 0.89264 0.91560 0.91687 0.89415 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.52 13.06 21.65 0.28 -62.24 15 2 C -0.08 -4.81 5.50 84.86 0.47 -4.34 15 3 Si 0.97 48.25 29.55 68.60 2.03 50.28 15 4 H -0.28 -13.42 7.11 99.48 0.71 -12.71 15 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 15 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 7 C -0.24 -14.25 9.93 84.03 0.83 -13.42 15 8 H 0.07 4.04 7.83 -2.91 -0.02 4.02 15 9 N -0.73 -40.09 4.99 -322.94 -1.61 -41.71 15 10 C 0.18 7.53 2.46 44.99 0.11 7.64 15 11 H 0.03 1.42 8.08 -2.39 -0.02 1.41 15 12 C -0.13 -4.59 5.50 30.59 0.17 -4.43 15 13 C -0.11 -2.96 5.92 30.60 0.18 -2.78 15 14 C -0.11 -2.40 5.92 30.59 0.18 -2.22 15 15 C -0.14 -3.38 5.55 30.61 0.17 -3.21 15 16 C 0.10 3.51 2.99 30.61 0.09 3.60 15 17 H 0.05 1.60 8.14 -2.39 -0.02 1.58 15 18 O -0.58 -21.75 13.18 -148.98 -1.96 -23.71 15 19 H 0.25 15.54 8.31 -92.70 -0.77 14.77 15 20 H 0.37 21.85 7.80 -92.71 -0.72 21.13 15 21 H 0.05 1.88 8.14 -2.39 -0.02 1.87 15 22 H 0.04 1.75 8.14 -2.39 -0.02 1.73 15 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 24 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 15 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 28 H 0.09 1.67 8.14 -2.39 -0.02 1.65 15 29 H 0.38 9.80 9.08 -74.06 -0.67 9.13 15 Total: -1.00 -71.00 240.25 0.68 -70.32 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: -0.26 Total: 26.20 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: 2.20 Total: -19.14 kcal Atomic # 7 Polarization: -102.61 SS G_CDS: -1.33 Total: -103.94 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.96 Total: -23.71 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -71.00 0.68 -70.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013015.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.987 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds