Wall clock time and date at job start Mon Mar 30 2020 02:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48500 * 109.46869 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47383 * 300.00334 * 3 2 1 6 6 H 1.48500 * 109.47270 * 60.00349 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.52997 * 109.47007 * 84.99832 * 10 9 7 13 13 C 1.52999 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 13 12 10 15 15 C 1.52997 * 109.47452 * 59.99536 * 14 13 12 16 16 C 1.53000 * 109.47023 * 204.99625 * 10 9 7 17 17 H 1.09004 * 109.46724 * 60.00549 * 16 10 9 18 18 O 1.42895 * 109.47621 * 300.00220 * 16 10 9 19 19 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 21 21 H 1.08996 * 109.47853 * 300.00060 * 12 10 9 22 22 H 1.09002 * 109.47153 * 60.00089 * 12 10 9 23 23 H 1.09000 * 109.47486 * 180.02562 * 13 12 10 24 24 H 1.09002 * 109.46716 * 60.00091 * 13 12 10 25 25 H 1.09002 * 109.46935 * 299.99411 * 14 13 12 26 26 H 1.09001 * 109.46812 * 179.97438 * 14 13 12 27 27 H 1.08993 * 109.47194 * 179.97438 * 15 14 13 28 28 H 1.09002 * 109.46695 * 59.99734 * 15 14 13 29 29 H 0.96698 * 114.00503 * 180.02562 * 18 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 6 3.1874 -5.3616 1.4338 14 6 2.3092 -6.4564 0.8245 15 6 1.9442 -6.0770 -0.6120 16 6 1.1802 -4.7519 -0.6110 17 1 0.9202 -4.4815 -1.6345 18 8 -0.0131 -4.8915 0.1625 19 1 -0.4850 0.8400 0.0004 20 1 0.3555 -2.3880 -0.0005 21 1 3.0482 -3.2562 1.8691 22 1 1.5127 -4.1427 2.0250 23 1 3.4470 -5.6321 2.4573 24 1 4.0976 -5.2555 0.8436 25 1 1.3990 -6.5625 1.4147 26 1 2.8540 -7.4005 0.8234 27 1 1.3190 -6.8571 -1.0462 28 1 2.8545 -5.9708 -1.2022 29 1 -0.6181 -5.5703 -0.1666 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052013017.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:35 Heat of formation + Delta-G solvation = -82.450689 kcal Electronic energy + Delta-G solvation = -11803.545893 eV Core-core repulsion = 9725.014213 eV Total energy + Delta-G solvation = -2078.531680 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.10999 -36.24954 -35.57127 -33.03134 -30.79105 -29.30602 -25.64913 -23.34692 -22.46337 -20.70978 -19.09969 -17.65151 -17.08134 -16.16838 -15.79363 -15.32476 -14.91391 -14.54007 -13.86282 -13.61916 -13.15374 -12.93519 -12.75504 -12.64761 -12.13775 -12.07317 -11.95887 -11.69821 -11.34891 -11.07426 -10.78858 -10.51965 -8.98158 -7.93443 -5.22012 1.45391 1.47219 1.57214 2.55832 3.35057 3.54643 3.83472 3.92746 4.06532 4.32063 4.41315 4.47488 4.65350 4.69168 4.75039 4.99860 5.00733 5.14881 5.31453 5.35957 5.38349 5.50067 5.55872 5.72218 6.28887 7.06944 7.34236 8.13698 8.37646 9.30796 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.065731 B = 0.010974 C = 0.010081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.877294 B = 2550.835465 C = 2776.772499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.737 5.737 10 C 0.174 3.826 11 H 0.052 0.948 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.108 4.108 15 C -0.139 4.139 16 C 0.104 3.896 17 H 0.042 0.958 18 O -0.574 6.574 19 H 0.250 0.750 20 H 0.374 0.626 21 H 0.032 0.968 22 H 0.040 0.960 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -13.624 -0.684 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.376 5.376 10 C 0.066 3.934 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.177 4.177 16 C 0.044 3.956 17 H 0.060 0.940 18 O -0.381 6.381 19 H 0.059 0.941 20 H 0.206 0.794 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.441 -13.033 -0.357 14.128 hybrid contribution -0.479 0.882 -0.221 1.028 sum 4.962 -12.151 -0.578 13.138 Atomic orbital electron populations 1.69868 1.06773 1.25874 1.59863 1.25617 0.96406 1.01231 1.04029 0.85042 0.78216 0.79656 0.76684 1.18899 1.21852 1.22136 1.19734 0.91411 0.85465 1.40639 0.90692 1.42625 1.05698 1.00839 1.88443 1.20558 0.93466 0.84598 0.94805 0.93034 1.21988 0.98920 0.96862 0.98629 1.21516 0.98336 0.93988 1.01158 1.21415 0.99712 0.98031 0.95408 1.22166 1.01253 0.96039 0.98240 1.22022 0.85431 0.95172 0.92968 0.94045 1.86595 1.32387 1.62442 1.56642 0.94108 0.79375 0.94951 0.94123 0.91572 0.91640 0.92302 0.89879 0.89427 0.90394 0.76708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.57 13.06 21.65 0.28 -62.29 15 2 C -0.08 -4.87 5.50 84.86 0.47 -4.40 15 3 Si 0.98 47.79 29.55 68.60 2.03 49.82 15 4 H -0.26 -12.11 7.11 99.48 0.71 -11.40 15 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 15 6 H -0.29 -14.40 7.11 99.48 0.71 -13.70 15 7 C -0.24 -14.08 9.93 84.03 0.83 -13.25 15 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 15 9 N -0.74 -40.10 5.09 -322.94 -1.64 -41.75 15 10 C 0.17 7.35 2.55 44.99 0.11 7.46 15 11 H 0.05 2.16 8.08 -2.39 -0.02 2.14 15 12 C -0.12 -4.83 5.36 30.59 0.16 -4.67 15 13 C -0.11 -3.13 5.92 30.60 0.18 -2.95 15 14 C -0.11 -2.54 5.78 30.60 0.18 -2.36 15 15 C -0.14 -3.30 5.63 30.58 0.17 -3.13 15 16 C 0.10 3.49 3.36 30.58 0.10 3.60 15 17 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 18 O -0.57 -19.82 11.48 -148.98 -1.71 -21.53 15 19 H 0.25 15.47 8.31 -92.71 -0.77 14.70 15 20 H 0.37 22.30 7.40 -92.71 -0.69 21.61 15 21 H 0.03 1.37 8.14 -2.39 -0.02 1.35 15 22 H 0.04 1.74 7.68 -2.39 -0.02 1.72 15 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.06 1.49 7.68 -2.39 -0.02 1.47 15 26 H 0.08 1.49 8.14 -2.39 -0.02 1.48 15 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 15 29 H 0.38 9.06 9.08 -74.06 -0.67 8.39 15 Total: -1.00 -69.81 237.58 0.95 -68.87 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: -0.22 Total: 26.58 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 2.21 Total: -19.70 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -1.36 Total: -104.03 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -1.71 Total: -21.53 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -69.81 0.95 -68.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052013017.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.583 kcal (2) G-P(sol) polarization free energy of solvation -69.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds