Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47124 * 269.99680 * 3 2 1 5 5 H 1.48496 * 109.47373 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.47208 * 150.00089 * 3 2 1 7 7 C 1.38636 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 0.02562 * 7 2 1 9 9 O 1.34928 * 119.99602 * 179.97438 * 7 2 1 10 10 C 1.42905 * 116.99599 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46921 * 150.00004 * 10 9 7 12 12 C 1.52996 * 109.46975 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47473 * 300.00004 * 12 11 10 14 14 N 1.46906 * 109.47378 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47024 * 60.00026 * 13 12 11 16 16 C 1.52996 * 109.47165 * 299.99937 * 15 13 12 17 17 H 0.97006 * 119.99662 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47187 * 30.00065 * 10 9 7 19 19 H 1.09000 * 109.47140 * 60.00032 * 11 10 9 20 20 H 1.09001 * 109.47375 * 300.00014 * 11 10 9 21 21 H 1.09004 * 109.47108 * 180.02562 * 12 11 10 22 22 H 1.09004 * 109.47368 * 60.00217 * 12 11 10 23 23 H 1.09000 * 109.47250 * 299.99985 * 13 12 11 24 24 H 1.00902 * 110.99567 * 179.97438 * 14 13 12 25 25 H 1.00901 * 111.00013 * 303.95621 * 14 13 12 26 26 H 1.09000 * 109.47140 * 59.99892 * 15 13 12 27 27 H 1.09001 * 109.47375 * 179.97438 * 15 13 12 28 28 H 1.09004 * 109.47552 * 300.00012 * 16 15 13 29 29 H 1.09004 * 109.47298 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2007 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3583 -1.2006 0.0000 10 6 4.0070 -2.4739 0.0000 11 6 5.3513 -2.3614 -0.7217 12 6 6.0461 -3.7245 -0.7212 13 6 6.2783 -4.1780 0.7214 14 7 6.9449 -5.4871 0.7220 15 6 4.9340 -4.2906 1.4432 16 6 4.2391 -2.9275 1.4427 17 1 -0.4850 0.8401 -0.0004 18 1 3.3787 -3.2018 -0.5134 19 1 5.9795 -1.6335 -0.2083 20 1 5.1860 -2.0379 -1.7494 21 1 7.0041 -3.6442 -1.2350 22 1 5.4181 -4.4527 -1.2344 23 1 6.9064 -3.4499 1.2346 24 1 7.1098 -5.8085 1.6641 25 1 6.4124 -6.1643 0.1965 26 1 4.3059 -5.0187 0.9300 27 1 5.0993 -4.6142 2.4709 28 1 4.8672 -2.1993 1.9559 29 1 3.2812 -3.0078 1.9566 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055143115.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -57.814331 kcal Electronic energy + Delta-G solvation = -11620.095375 eV Core-core repulsion = 9542.632008 eV Total energy + Delta-G solvation = -2077.463367 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.69605 -36.04128 -32.65130 -31.49957 -30.44387 -27.05730 -24.07379 -22.31238 -21.03082 -19.61817 -17.53994 -16.01903 -15.60822 -14.98280 -14.04125 -13.87856 -13.66277 -13.00526 -12.75928 -12.01142 -11.90365 -11.86458 -11.31826 -10.98497 -10.81030 -10.78376 -10.40731 -10.16391 -9.71764 -9.39809 -9.17613 -8.62650 -8.13069 -5.96667 -3.63139 3.44044 3.46914 3.64013 4.53726 4.59676 4.89338 4.98743 5.19101 5.36737 5.48291 5.57374 5.72624 5.79732 5.84387 5.90227 6.17344 6.27442 6.32899 6.42985 6.51340 6.62424 6.86920 6.93402 7.14605 7.42010 7.95142 8.40242 9.43937 10.00713 11.16399 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.075407 B = 0.010078 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.230742 B = 2777.700383 C = 2920.441591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.041 3.959 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.265 1.265 7 C -0.353 4.353 8 H 0.077 0.923 9 O -0.326 6.326 10 C 0.110 3.890 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.088 3.912 14 N -0.848 5.848 15 C -0.147 4.147 16 C -0.136 4.136 17 H 0.268 0.732 18 H 0.044 0.956 19 H 0.064 0.936 20 H 0.067 0.933 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.337 0.663 25 H 0.337 0.663 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.276 -7.809 1.369 13.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.155 4.155 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.431 4.431 8 H 0.095 0.905 9 O -0.242 6.242 10 C 0.051 3.949 11 C -0.155 4.155 12 C -0.143 4.143 13 C -0.023 4.023 14 N -0.375 5.375 15 C -0.187 4.187 16 C -0.175 4.175 17 H 0.078 0.922 18 H 0.062 0.938 19 H 0.083 0.917 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.077 0.923 23 H 0.098 0.902 24 H 0.149 0.851 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.883 -7.160 0.992 13.909 hybrid contribution -0.823 0.201 0.586 1.030 sum 11.060 -6.958 1.578 13.161 Atomic orbital electron populations 1.69697 1.05349 1.27100 1.54038 1.24320 0.94854 0.98213 0.98151 0.86157 0.79964 0.82305 0.78133 1.20799 1.21846 1.18954 1.20446 0.78622 0.94944 1.49133 0.90506 1.85261 1.20316 1.25267 1.93367 1.21644 0.92407 0.87584 0.93263 1.21577 0.96324 0.96347 1.01252 1.21470 1.00377 0.96985 0.95449 1.21534 0.92918 0.91193 0.96696 1.58997 1.53701 1.05169 1.19661 1.22342 0.97651 0.98770 0.99945 1.22015 1.00675 0.95182 0.99610 0.92215 0.93751 0.91676 0.91377 0.91349 0.92266 0.90224 0.85075 0.85092 0.92356 0.92622 0.91953 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.75 13.97 55.48 0.77 -27.97 15 2 C 0.04 1.24 5.49 -17.51 -0.10 1.15 15 3 Si 0.91 23.56 28.62 -169.99 -4.86 18.69 15 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 15 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 6 H -0.27 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.35 -10.50 10.23 30.88 0.32 -10.18 15 8 H 0.08 2.38 7.88 -52.49 -0.41 1.97 15 9 O -0.33 -8.67 8.25 -16.50 -0.14 -8.80 15 10 C 0.11 2.29 2.65 -26.73 -0.07 2.22 15 11 C -0.12 -2.00 5.57 -26.73 -0.15 -2.15 15 12 C -0.10 -1.46 5.46 -26.74 -0.15 -1.60 15 13 C 0.09 1.14 3.25 -67.71 -0.22 0.92 15 14 N -0.85 -9.29 9.25 -4.67 -0.04 -9.34 15 15 C -0.15 -2.08 5.49 -26.73 -0.15 -2.22 15 16 C -0.14 -2.49 5.54 -26.73 -0.15 -2.64 15 17 H 0.27 7.87 8.31 -40.82 -0.34 7.53 15 18 H 0.04 0.95 7.80 -51.93 -0.41 0.55 15 19 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 20 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 15 24 H 0.34 3.17 9.04 -39.29 -0.36 2.81 15 25 H 0.34 3.35 8.98 -39.29 -0.35 3.00 15 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 15 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 240.39 15.07 3.62 3.62 Total: -1.00 -31.67 240.39 -5.77 -37.45 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.47 Total: 0.85 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.66 Total: -14.50 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.73 Total: -37.31 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.14 Total: -8.80 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.86 Total: 18.69 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.67 -5.77 -37.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055143115.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.368 kcal (2) G-P(sol) polarization free energy of solvation -31.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds