Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47124 * 269.99680 * 3 2 1 5 5 H 1.48496 * 109.47373 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.47208 * 150.00089 * 3 2 1 7 7 C 1.38636 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00371 * 0.02562 * 7 2 1 9 9 O 1.34928 * 119.99602 * 179.97438 * 7 2 1 10 10 C 1.42905 * 116.99599 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46921 * 150.00004 * 10 9 7 12 12 C 1.52996 * 109.46975 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47473 * 300.00004 * 12 11 10 14 14 N 1.46906 * 109.47378 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47024 * 60.00026 * 13 12 11 16 16 C 1.52996 * 109.47165 * 299.99937 * 15 13 12 17 17 H 0.97006 * 119.99662 * 0.02562 * 1 2 3 18 18 H 1.09000 * 109.47187 * 30.00065 * 10 9 7 19 19 H 1.09000 * 109.47140 * 60.00032 * 11 10 9 20 20 H 1.09001 * 109.47375 * 300.00014 * 11 10 9 21 21 H 1.09004 * 109.47108 * 180.02562 * 12 11 10 22 22 H 1.09004 * 109.47368 * 60.00217 * 12 11 10 23 23 H 1.09000 * 109.47250 * 299.99985 * 13 12 11 24 24 H 1.00902 * 110.99567 * 179.97438 * 14 13 12 25 25 H 1.00901 * 111.00013 * 303.95621 * 14 13 12 26 26 H 1.09000 * 109.47140 * 59.99892 * 15 13 12 27 27 H 1.09001 * 109.47375 * 179.97438 * 15 13 12 28 28 H 1.09004 * 109.47552 * 300.00012 * 16 15 13 29 29 H 1.09004 * 109.47298 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6527 0.7000 6 1 3.5474 1.4402 0.7000 7 6 2.0090 -1.2007 0.0005 8 1 1.4690 -2.1359 0.0005 9 8 3.3583 -1.2006 0.0000 10 6 4.0070 -2.4739 0.0000 11 6 5.3513 -2.3614 -0.7217 12 6 6.0461 -3.7245 -0.7212 13 6 6.2783 -4.1780 0.7214 14 7 6.9449 -5.4871 0.7220 15 6 4.9340 -4.2906 1.4432 16 6 4.2391 -2.9275 1.4427 17 1 -0.4850 0.8401 -0.0004 18 1 3.3787 -3.2018 -0.5134 19 1 5.9795 -1.6335 -0.2083 20 1 5.1860 -2.0379 -1.7494 21 1 7.0041 -3.6442 -1.2350 22 1 5.4181 -4.4527 -1.2344 23 1 6.9064 -3.4499 1.2346 24 1 7.1098 -5.8085 1.6641 25 1 6.4124 -6.1643 0.1965 26 1 4.3059 -5.0187 0.9300 27 1 5.0993 -4.6142 2.4709 28 1 4.8672 -2.1993 1.9559 29 1 3.2812 -3.0078 1.9566 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055143115.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -81.085461 kcal Electronic energy + Delta-G solvation = -11621.104487 eV Core-core repulsion = 9542.632008 eV Total energy + Delta-G solvation = -2078.472479 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.13717 -37.77155 -34.37763 -33.34201 -31.74644 -28.47398 -26.17396 -23.62357 -22.41873 -21.00680 -19.71020 -17.78536 -16.85736 -16.33773 -15.76864 -15.36125 -15.11634 -14.69463 -14.35482 -13.82364 -13.63966 -13.15969 -13.05273 -12.62294 -12.32987 -12.11615 -12.04218 -11.74084 -11.54682 -11.24631 -11.00210 -10.30842 -9.57767 -8.27929 -5.97105 1.37045 1.40719 1.59424 2.43242 3.04578 3.26346 3.65285 3.76274 3.91899 4.22755 4.26869 4.35640 4.45223 4.52841 4.54218 4.82413 4.99494 5.08492 5.11683 5.16786 5.21223 5.38991 5.46887 5.61072 6.14852 6.24950 6.64503 7.11664 7.83074 8.88371 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.075407 B = 0.010078 C = 0.009585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.230742 B = 2777.700383 C = 2920.441591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.017 4.017 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.263 1.263 7 C -0.352 4.352 8 H 0.045 0.955 9 O -0.344 6.344 10 C 0.096 3.904 11 C -0.110 4.110 12 C -0.097 4.097 13 C 0.096 3.904 14 N -0.843 5.843 15 C -0.137 4.137 16 C -0.131 4.131 17 H 0.274 0.726 18 H 0.030 0.970 19 H 0.068 0.932 20 H 0.063 0.937 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.081 0.919 24 H 0.349 0.651 25 H 0.345 0.655 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.457 -7.959 1.500 15.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.210 4.210 3 Si 0.801 3.199 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.431 4.431 8 H 0.062 0.938 9 O -0.260 6.260 10 C 0.038 3.962 11 C -0.148 4.148 12 C -0.135 4.135 13 C -0.016 4.016 14 N -0.372 5.372 15 C -0.177 4.177 16 C -0.170 4.170 17 H 0.083 0.917 18 H 0.048 0.952 19 H 0.087 0.913 20 H 0.081 0.919 21 H 0.104 0.896 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.163 0.837 25 H 0.158 0.842 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 14.081 -7.345 1.126 15.921 hybrid contribution -1.507 0.127 0.546 1.608 sum 12.574 -7.218 1.672 14.594 Atomic orbital electron populations 1.69808 1.06960 1.28390 1.55209 1.25225 0.95808 1.02019 0.97950 0.85100 0.78489 0.77707 0.78640 1.19719 1.20557 1.18776 1.20375 0.80100 0.93922 1.48673 0.93753 1.85190 1.18406 1.28720 1.93700 1.22084 0.93523 0.85184 0.95417 1.21547 0.94191 0.98768 1.00316 1.21418 1.00739 0.94852 0.96516 1.21386 0.92101 0.92457 0.95668 1.58948 1.53082 1.04470 1.20738 1.22304 0.97964 0.95821 1.01604 1.21918 0.99881 0.97940 0.97265 0.91749 0.95214 0.91314 0.91852 0.89594 0.91907 0.90133 0.83720 0.84223 0.92272 0.90582 0.91818 0.94323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.07 13.97 21.61 0.30 -60.77 15 2 C -0.02 -1.06 5.49 84.82 0.47 -0.60 15 3 Si 0.98 48.60 28.62 68.60 1.96 50.56 15 4 H -0.27 -12.99 7.11 99.48 0.71 -12.29 15 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 15 6 H -0.26 -12.91 7.11 99.48 0.71 -12.20 15 7 C -0.35 -21.51 10.23 67.91 0.70 -20.82 15 8 H 0.04 2.91 7.88 -2.91 -0.02 2.89 15 9 O -0.34 -18.45 8.25 -81.97 -0.68 -19.13 15 10 C 0.10 4.01 2.65 30.59 0.08 4.09 15 11 C -0.11 -3.62 5.57 30.59 0.17 -3.45 15 12 C -0.10 -2.45 5.46 30.59 0.17 -2.28 15 13 C 0.10 2.20 3.25 44.91 0.15 2.35 15 14 N -0.84 -15.47 9.25 -168.68 -1.56 -17.03 15 15 C -0.14 -3.59 5.49 30.59 0.17 -3.42 15 16 C -0.13 -4.76 5.54 30.59 0.17 -4.59 15 17 H 0.27 16.21 8.31 -92.70 -0.77 15.44 15 18 H 0.03 1.31 7.80 -2.39 -0.02 1.29 15 19 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 20 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.09 1.93 8.14 -2.38 -0.02 1.91 15 22 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 23 H 0.08 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.35 5.25 9.04 -89.69 -0.81 4.44 15 25 H 0.34 5.66 8.98 -89.69 -0.81 4.86 15 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 15 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 15 29 H 0.04 1.58 8.14 -2.38 -0.02 1.56 15 Total: -1.00 -68.18 240.39 1.61 -66.58 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -0.48 Total: 8.52 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 2.06 Total: -28.73 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -1.26 Total: -77.80 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.68 Total: -19.13 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.96 Total: 50.56 kcal Total: -68.18 1.61 -66.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055143115.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.510 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds