Wall clock time and date at job start Mon Mar 30 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 N 1.46505 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 15 15 C 1.52999 * 117.50237 * 7.70319 * 14 2 1 16 16 C 1.52998 * 117.50188 * 299.03911 * 14 2 1 17 17 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 18 18 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 20 20 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 21 21 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 22 22 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 23 23 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 24 24 H 0.96996 * 119.99606 * 0.02562 * 5 4 3 25 25 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 26 26 H 1.09004 * 115.54525 * 153.37466 * 14 2 1 27 27 H 1.08995 * 117.49846 * 0.02562 * 15 14 2 28 28 H 1.08999 * 117.49509 * 145.02121 * 15 14 2 29 29 H 1.09001 * 117.50084 * 214.98372 * 16 14 2 30 30 H 1.09000 * 117.49562 * 359.97438 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1571 3.4250 1.3184 6 6 1.9526 4.2369 2.4020 7 1 1.4042 3.8690 3.2566 8 6 2.4501 5.5327 2.4019 9 7 3.1179 5.9813 1.3602 10 14 2.1718 6.6401 3.8804 11 1 2.7827 6.0214 5.0841 12 1 2.7985 7.9634 3.6326 13 1 0.7136 6.8156 4.0998 14 6 1.9953 -0.7660 -1.1376 15 6 0.9929 -1.2528 -2.1860 16 6 1.6335 -2.2505 -1.2177 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.5611 1.9273 -0.8309 21 1 3.0797 1.3443 -0.1084 22 1 2.0658 1.5016 2.1492 23 1 0.5472 2.0845 1.4264 24 1 2.6492 3.7554 0.5507 25 1 3.4653 6.8870 1.3599 26 1 2.9846 -0.4696 -1.4865 27 1 -0.0571 -1.0042 -2.0319 28 1 1.3228 -1.2769 -3.2246 29 1 2.3844 -2.9306 -1.6197 30 1 1.0052 -2.6587 -0.4261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062010029.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:56 Heat of formation + Delta-G solvation = 45.708344 kcal Electronic energy + Delta-G solvation = -11051.040490 eV Core-core repulsion = 9075.784865 eV Total energy + Delta-G solvation = -1975.255625 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.77464 -35.25218 -33.35086 -30.89954 -27.71791 -25.98348 -23.20456 -22.39184 -20.89679 -19.87652 -17.16600 -16.48304 -15.26021 -14.71050 -14.38766 -13.76610 -13.22560 -13.01938 -12.65369 -12.18952 -11.69192 -11.42862 -11.19084 -10.88827 -10.87947 -10.56482 -10.51488 -10.28574 -9.98345 -9.66856 -8.82353 -7.96806 -6.88606 -5.73231 -3.02031 3.47153 3.50686 3.52239 3.72988 4.12383 4.65617 4.86065 4.96138 5.05850 5.33201 5.52015 5.61052 5.62669 5.73675 5.80798 5.88527 5.93955 6.08636 6.10408 6.17524 6.32678 6.79866 6.88280 7.25626 7.33348 7.73263 8.45923 9.56422 10.14414 10.49126 11.49940 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.108003 B = 0.007006 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.190054 B = 3995.497750 C = 4115.384206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.508 5.508 3 C 0.051 3.949 4 C 0.157 3.843 5 N -0.734 5.734 6 C -0.238 4.238 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.936 5.936 10 Si 0.909 3.091 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.026 3.974 15 C -0.223 4.223 16 C -0.174 4.174 17 H 0.029 0.971 18 H 0.063 0.937 19 H 0.076 0.924 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.028 0.972 23 H 0.019 0.981 24 H 0.383 0.617 25 H 0.255 0.745 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -12.983 -5.491 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.230 5.230 3 C -0.077 4.077 4 C 0.029 3.971 5 N -0.379 5.379 6 C -0.369 4.369 7 H 0.088 0.912 8 C -0.211 4.211 9 N -0.585 5.585 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.213 1.213 14 C -0.084 4.084 15 C -0.262 4.262 16 C -0.212 4.212 17 H 0.048 0.952 18 H 0.081 0.919 19 H 0.095 0.905 20 H 0.054 0.946 21 H 0.093 0.907 22 H 0.046 0.954 23 H 0.036 0.964 24 H 0.216 0.784 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.117 0.883 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.693 -13.121 -4.872 14.476 hybrid contribution -0.249 1.117 -0.250 1.171 sum -3.942 -12.005 -5.123 13.634 Atomic orbital electron populations 1.22543 0.87670 1.01312 1.01432 1.61780 1.07736 1.14418 1.39037 1.22323 1.00087 0.86445 0.98815 1.20603 0.96303 0.86373 0.93789 1.42291 1.66512 1.08861 1.20189 1.19192 1.28922 0.93379 0.95398 0.91163 1.24746 1.00938 0.97479 0.97928 1.69653 1.41918 1.17281 1.29614 0.86233 0.77618 0.79971 0.82177 1.21218 1.21676 1.21273 1.22695 0.98376 0.95101 0.92257 1.23551 0.99968 1.06285 0.96370 1.23037 1.03688 0.92568 1.01858 0.95212 0.91855 0.90499 0.94590 0.90674 0.95415 0.96374 0.78414 0.93473 0.86569 0.88318 0.89105 0.88755 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 7.95 60.07 0.48 0.73 16 2 N -0.51 -7.81 4.97 -234.89 -1.17 -8.97 16 3 C 0.05 0.91 5.05 -3.83 -0.02 0.89 16 4 C 0.16 3.38 6.18 -4.04 -0.02 3.35 16 5 N -0.73 -19.47 5.60 -59.91 -0.34 -19.80 16 6 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 7 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 8 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 9 N -0.94 -28.92 13.06 55.49 0.72 -28.20 16 10 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 C 0.03 0.33 6.11 -67.71 -0.41 -0.08 16 15 C -0.22 -2.46 9.51 -26.69 -0.25 -2.72 16 16 C -0.17 -1.89 9.99 -26.69 -0.27 -2.15 16 17 H 0.03 0.40 7.23 -51.93 -0.38 0.02 16 18 H 0.06 0.75 6.63 -51.93 -0.34 0.41 16 19 H 0.08 1.11 6.47 -51.93 -0.34 0.78 16 20 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 21 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.02 0.39 6.55 -51.93 -0.34 0.05 16 24 H 0.38 10.55 7.67 -40.82 -0.31 10.24 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.12 1.46 7.93 -51.93 -0.41 1.05 16 27 H 0.10 1.09 5.90 -51.93 -0.31 0.78 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.04 7.56 -51.93 -0.39 0.65 16 LS Contribution 247.37 15.07 3.73 3.73 Total: -1.00 -30.80 247.37 -7.29 -38.09 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.47 Total: 4.93 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -0.75 Total: -7.56 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.78 Total: -56.97 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.80 -7.29 -38.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062010029.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.794 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds