Wall clock time and date at job start Mon Mar 30 2020 01:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 N 1.46505 * 109.47212 * 179.97438 * 4 3 2 6 6 C 1.36936 * 119.99992 * 179.97438 * 5 4 3 7 7 H 1.08006 * 119.99834 * 0.02562 * 6 5 4 8 8 C 1.38801 * 120.00093 * 180.02562 * 6 5 4 9 9 N 1.31619 * 120.00176 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00265 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46725 * 59.99976 * 10 8 6 12 12 H 1.48498 * 109.47172 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46920 * 300.00189 * 10 8 6 14 14 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 15 15 C 1.52999 * 117.50237 * 7.70319 * 14 2 1 16 16 C 1.52998 * 117.50188 * 299.03911 * 14 2 1 17 17 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 18 18 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 19 19 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 20 20 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 21 21 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 22 22 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 23 23 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 24 24 H 0.96996 * 119.99606 * 0.02562 * 5 4 3 25 25 H 0.97001 * 120.00803 * 179.97438 * 9 8 6 26 26 H 1.09004 * 115.54525 * 153.37466 * 14 2 1 27 27 H 1.08995 * 117.49846 * 0.02562 * 15 14 2 28 28 H 1.08999 * 117.49509 * 145.02121 * 15 14 2 29 29 H 1.09001 * 117.50084 * 214.98372 * 16 14 2 30 30 H 1.09000 * 117.49562 * 359.97438 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 7 2.1571 3.4250 1.3184 6 6 1.9526 4.2369 2.4020 7 1 1.4042 3.8690 3.2566 8 6 2.4501 5.5327 2.4019 9 7 3.1179 5.9813 1.3602 10 14 2.1718 6.6401 3.8804 11 1 2.7827 6.0214 5.0841 12 1 2.7985 7.9634 3.6326 13 1 0.7136 6.8156 4.0998 14 6 1.9953 -0.7660 -1.1376 15 6 0.9929 -1.2528 -2.1860 16 6 1.6335 -2.2505 -1.2177 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.5611 1.9273 -0.8309 21 1 3.0797 1.3443 -0.1084 22 1 2.0658 1.5016 2.1492 23 1 0.5472 2.0845 1.4264 24 1 2.6492 3.7554 0.5507 25 1 3.4653 6.8870 1.3599 26 1 2.9846 -0.4696 -1.4865 27 1 -0.0571 -1.0042 -2.0319 28 1 1.3228 -1.2769 -3.2246 29 1 2.3844 -2.9306 -1.6197 30 1 1.0052 -2.6587 -0.4261 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062010029.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:56 Heat of formation + Delta-G solvation = 24.044292 kcal Electronic energy + Delta-G solvation = -11051.979914 eV Core-core repulsion = 9075.784865 eV Total energy + Delta-G solvation = -1976.195049 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.87272 -36.95567 -34.92770 -32.84651 -29.29804 -27.39602 -25.16041 -23.28498 -22.47295 -20.99525 -19.22505 -17.68729 -16.58773 -16.46012 -15.90703 -15.26909 -15.06941 -14.50840 -14.23181 -13.26994 -13.05833 -12.92954 -12.72495 -12.55415 -12.28295 -12.15206 -12.07871 -11.84755 -11.57324 -11.18861 -10.93610 -9.11820 -9.04031 -7.97204 -5.27662 1.47344 1.51396 1.57591 2.50796 2.71247 3.11907 3.36339 3.87165 4.02744 4.10703 4.14758 4.19869 4.27645 4.46234 4.59311 4.66170 4.77867 4.91036 4.94560 5.08682 5.17930 5.19633 5.27062 5.46190 6.03250 6.12707 6.25451 7.30584 8.03991 8.28814 9.26469 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.108003 B = 0.007006 C = 0.006802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 259.190054 B = 3995.497750 C = 4115.384206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.516 5.516 3 C 0.067 3.933 4 C 0.160 3.840 5 N -0.747 5.747 6 C -0.252 4.252 7 H 0.076 0.924 8 C -0.075 4.075 9 N -0.971 5.971 10 Si 0.979 3.021 11 H -0.277 1.277 12 H -0.292 1.292 13 H -0.276 1.276 14 C -0.004 4.004 15 C -0.212 4.212 16 C -0.158 4.158 17 H 0.031 0.969 18 H 0.085 0.915 19 H 0.064 0.936 20 H 0.030 0.970 21 H 0.071 0.929 22 H 0.021 0.979 23 H 0.022 0.978 24 H 0.374 0.626 25 H 0.253 0.747 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 -14.028 -5.378 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.238 5.238 3 C -0.061 4.061 4 C 0.034 3.966 5 N -0.390 5.390 6 C -0.383 4.383 7 H 0.094 0.906 8 C -0.267 4.267 9 N -0.621 5.621 10 Si 0.807 3.193 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.202 1.202 14 C -0.113 4.113 15 C -0.251 4.251 16 C -0.196 4.196 17 H 0.050 0.950 18 H 0.103 0.897 19 H 0.083 0.917 20 H 0.048 0.952 21 H 0.089 0.911 22 H 0.039 0.961 23 H 0.039 0.961 24 H 0.205 0.795 25 H 0.062 0.938 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.336 -14.216 -4.756 15.605 hybrid contribution -0.077 1.348 -0.316 1.387 sum -4.413 -12.868 -5.072 14.519 Atomic orbital electron populations 1.22572 0.86798 1.02594 1.00928 1.61767 1.08619 1.12608 1.40836 1.22012 0.99890 0.87877 0.96328 1.20662 0.96009 0.84324 0.95654 1.42490 1.66630 1.10538 1.19362 1.19608 1.28526 0.94048 0.96133 0.90646 1.25636 1.01084 0.99021 1.00949 1.69816 1.43157 1.17474 1.31689 0.85133 0.77844 0.77571 0.78733 1.20253 1.21849 1.20205 1.22802 0.99088 0.96564 0.92826 1.23598 0.99466 1.05312 0.96734 1.23122 1.03620 0.91366 1.01491 0.95012 0.89658 0.91688 0.95187 0.91058 0.96088 0.96051 0.79480 0.93809 0.86591 0.88215 0.87778 0.86946 0.88578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 7.95 127.69 1.02 1.50 16 2 N -0.52 -15.30 4.97 -897.07 -4.46 -19.76 16 3 C 0.07 2.39 5.05 86.30 0.44 2.82 16 4 C 0.16 6.91 6.18 86.38 0.53 7.45 16 5 N -0.75 -40.07 5.60 -343.45 -1.92 -41.99 16 6 C -0.25 -14.61 9.99 84.03 0.84 -13.77 16 7 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 9 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 10 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 C 0.00 -0.09 6.11 44.92 0.27 0.19 16 15 C -0.21 -4.15 9.51 30.62 0.29 -3.86 16 16 C -0.16 -3.00 9.99 30.62 0.31 -2.69 16 17 H 0.03 0.81 7.23 -2.39 -0.02 0.79 16 18 H 0.08 1.83 6.63 -2.39 -0.02 1.81 16 19 H 0.06 1.83 6.47 -2.39 -0.02 1.81 16 20 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 21 H 0.07 2.56 7.96 -2.39 -0.02 2.54 16 22 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.02 0.92 6.55 -2.39 -0.02 0.91 16 24 H 0.37 21.04 7.67 -92.71 -0.71 20.33 16 25 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.12 2.78 7.93 -2.38 -0.02 2.77 16 27 H 0.10 1.94 5.90 -2.39 -0.01 1.93 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 30 H 0.10 1.82 7.56 -2.39 -0.02 1.80 16 Total: -1.00 -64.45 247.37 0.49 -63.95 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.40 Total: 21.59 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 4.16 Total: -12.29 kcal Atomic # 7 Polarization: -115.97 SS G_CDS: -6.10 Total: -122.07 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -64.45 0.49 -63.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062010029.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.998 kcal (2) G-P(sol) polarization free energy of solvation -64.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds