Wall clock time and date at job start Mon Mar 30 2020 02:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47009 * 270.00011 * 3 2 1 5 5 H 1.48499 * 109.47032 * 30.00228 * 3 2 1 6 6 H 1.48496 * 109.46712 * 150.00098 * 3 2 1 7 7 C 1.38635 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 359.97438 * 7 2 1 9 9 O 1.34922 * 119.99987 * 179.97438 * 7 2 1 10 10 C 1.42902 * 117.00001 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47107 * 180.02562 * 10 9 7 12 12 N 1.46900 * 110.53643 * 307.61403 * 11 10 9 13 13 C 1.54887 * 110.48548 * 70.22461 * 11 10 9 14 14 C 1.54893 * 102.74533 * 156.62347 * 13 11 10 15 15 C 1.54266 * 104.19500 * 322.05712 * 14 13 11 16 16 C 1.53872 * 106.60044 * 23.61099 * 15 14 13 17 17 H 0.97000 * 119.99813 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.46949 * 60.00063 * 10 9 7 19 19 H 1.08994 * 109.46995 * 300.00453 * 10 9 7 20 20 H 1.00896 * 111.00428 * 57.39025 * 12 11 10 21 21 H 1.00902 * 110.99977 * 181.34585 * 12 11 10 22 22 H 1.09001 * 110.75744 * 274.93249 * 13 11 10 23 23 H 1.09000 * 110.75698 * 38.31067 * 13 11 10 24 24 H 1.09002 * 110.48578 * 203.38190 * 14 13 11 25 25 H 1.08998 * 110.60430 * 80.79077 * 14 13 11 26 26 H 1.09002 * 110.02957 * 264.32709 * 15 14 13 27 27 H 1.08996 * 110.03427 * 142.89930 * 15 14 13 28 28 H 1.09003 * 110.03622 * 240.71485 * 16 15 14 29 29 H 1.09005 * 110.03465 * 119.28158 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0091 -1.2006 -0.0005 8 1 1.4690 -2.1359 -0.0005 9 8 3.3583 -1.2006 -0.0011 10 6 4.0071 -2.4738 -0.0010 11 6 5.5239 -2.2733 -0.0010 12 7 5.9247 -1.3735 -1.0907 13 6 5.9969 -1.7156 1.3643 14 6 7.4846 -2.1444 1.4117 15 6 7.4944 -3.5477 0.7712 16 6 6.2478 -3.6298 -0.1270 17 1 -0.4850 0.8401 -0.0004 18 1 3.7138 -3.0310 -0.8908 19 1 3.7145 -3.0306 0.8891 20 1 5.4556 -0.4834 -1.0158 21 1 6.9264 -1.2537 -1.1108 22 1 5.9069 -0.6296 1.3901 23 1 5.4377 -2.1703 2.1820 24 1 7.8349 -2.1931 2.4427 25 1 8.1006 -1.4565 0.8326 26 1 7.4469 -4.3123 1.5467 27 1 8.3955 -3.6785 0.1722 28 1 5.5952 -4.4342 0.2124 29 1 6.5439 -3.8002 -1.1621 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070875748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:53 Heat of formation + Delta-G solvation = -51.705467 kcal Electronic energy + Delta-G solvation = -11722.134854 eV Core-core repulsion = 9644.936387 eV Total energy + Delta-G solvation = -2077.198467 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.80778 -35.99406 -32.17572 -31.49673 -28.65655 -27.95341 -24.81977 -22.90620 -20.34625 -18.85831 -17.48918 -15.84998 -15.48794 -15.05685 -14.38741 -14.05387 -13.60503 -13.12910 -12.79671 -12.19392 -11.73385 -11.27866 -11.11510 -10.94186 -10.87419 -10.72345 -10.39495 -10.30564 -9.91690 -9.51064 -9.23565 -8.18584 -8.10382 -5.94783 -3.60963 3.43677 3.46786 3.60225 4.59154 4.70020 4.80876 4.83927 5.17101 5.34053 5.38823 5.60385 5.70095 5.76705 5.84556 5.97844 6.01246 6.11530 6.19548 6.43904 6.46226 6.47254 6.62661 6.70588 7.66736 7.96449 7.99436 8.41879 9.45583 10.02030 11.18539 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.063981 B = 0.011392 C = 0.010608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.521712 B = 2457.332113 C = 2638.947964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.041 3.959 3 Si 0.909 3.091 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.351 4.351 8 H 0.077 0.923 9 O -0.331 6.331 10 C 0.100 3.900 11 C 0.121 3.879 12 N -0.829 5.829 13 C -0.148 4.148 14 C -0.127 4.127 15 C -0.123 4.123 16 C -0.114 4.114 17 H 0.268 0.732 18 H 0.035 0.965 19 H 0.031 0.969 20 H 0.353 0.647 21 H 0.328 0.672 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.379 -4.098 1.753 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.155 4.155 3 Si 0.737 3.263 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.429 4.429 8 H 0.094 0.906 9 O -0.247 6.247 10 C 0.022 3.978 11 C 0.028 3.972 12 N -0.359 5.359 13 C -0.188 4.188 14 C -0.165 4.165 15 C -0.161 4.161 16 C -0.153 4.153 17 H 0.078 0.922 18 H 0.053 0.947 19 H 0.049 0.951 20 H 0.168 0.832 21 H 0.139 0.861 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.041 -4.374 1.259 14.760 hybrid contribution 0.496 1.149 0.802 1.486 sum 14.537 -3.225 2.061 15.033 Atomic orbital electron populations 1.69693 1.05352 1.27053 1.54139 1.24309 0.94841 0.98153 0.98217 0.86126 0.79763 0.82342 0.78045 1.20723 1.21971 1.19228 1.20365 0.78617 0.94979 1.48948 0.90572 1.85124 1.20292 1.25279 1.93958 1.22054 0.89210 0.87950 0.98607 1.21622 0.94311 0.92630 0.88645 1.58812 1.10716 1.19102 1.47236 1.23251 0.94967 1.01253 0.99326 1.22384 0.97295 0.96546 1.00239 1.22132 0.98015 0.97219 0.98727 1.22174 0.96152 0.96624 1.00302 0.92234 0.94739 0.95122 0.83244 0.86051 0.91457 0.91040 0.92033 0.92168 0.92041 0.92153 0.91330 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.92 13.97 55.48 0.77 -28.15 15 2 C 0.04 1.25 5.49 -17.51 -0.10 1.15 15 3 Si 0.91 23.42 28.62 -169.99 -4.86 18.55 15 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 15 5 H -0.29 -7.41 7.11 56.52 0.40 -7.00 15 6 H -0.27 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.35 -10.52 10.35 30.88 0.32 -10.20 15 8 H 0.08 2.40 8.00 -52.49 -0.42 1.98 15 9 O -0.33 -8.70 7.70 -16.49 -0.13 -8.83 15 10 C 0.10 2.15 5.03 37.16 0.19 2.33 15 11 C 0.12 2.08 0.92 -129.94 -0.12 1.96 15 12 N -0.83 -14.04 8.95 2.07 0.02 -14.02 15 13 C -0.15 -2.37 5.92 -24.74 -0.15 -2.51 15 14 C -0.13 -1.57 6.49 -25.07 -0.16 -1.74 15 15 C -0.12 -1.44 6.80 -25.61 -0.17 -1.61 15 16 C -0.11 -1.60 6.06 -25.61 -0.16 -1.75 15 17 H 0.27 7.90 8.31 -40.82 -0.34 7.57 15 18 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.03 0.65 8.02 -51.93 -0.42 0.23 15 20 H 0.35 6.65 8.28 -39.29 -0.33 6.32 15 21 H 0.33 4.60 8.30 -39.29 -0.33 4.27 15 22 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.07 1.17 7.96 -51.93 -0.41 0.76 15 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 25 H 0.06 0.70 7.81 -51.93 -0.41 0.29 15 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 28 H 0.07 0.93 7.84 -51.93 -0.41 0.53 15 29 H 0.07 1.02 8.05 -51.93 -0.42 0.60 15 LS Contribution 240.90 15.07 3.63 3.63 Total: -1.00 -31.63 240.90 -5.30 -36.93 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.38 Total: 4.26 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.35 Total: -12.38 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.79 Total: -42.17 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.13 Total: -8.83 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -4.86 Total: 18.55 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.63 -5.30 -36.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070875748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.775 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds