Wall clock time and date at job start Mon Mar 30 2020 02:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48500 * 109.47009 * 270.00011 * 3 2 1 5 5 H 1.48499 * 109.47032 * 30.00228 * 3 2 1 6 6 H 1.48496 * 109.46712 * 150.00098 * 3 2 1 7 7 C 1.38635 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 359.97438 * 7 2 1 9 9 O 1.34922 * 119.99987 * 179.97438 * 7 2 1 10 10 C 1.42902 * 117.00001 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47107 * 180.02562 * 10 9 7 12 12 N 1.46900 * 110.53643 * 307.61403 * 11 10 9 13 13 C 1.54887 * 110.48548 * 70.22461 * 11 10 9 14 14 C 1.54893 * 102.74533 * 156.62347 * 13 11 10 15 15 C 1.54266 * 104.19500 * 322.05712 * 14 13 11 16 16 C 1.53872 * 106.60044 * 23.61099 * 15 14 13 17 17 H 0.97000 * 119.99813 * 0.02562 * 1 2 3 18 18 H 1.09005 * 109.46949 * 60.00063 * 10 9 7 19 19 H 1.08994 * 109.46995 * 300.00453 * 10 9 7 20 20 H 1.00896 * 111.00428 * 57.39025 * 12 11 10 21 21 H 1.00902 * 110.99977 * 181.34585 * 12 11 10 22 22 H 1.09001 * 110.75744 * 274.93249 * 13 11 10 23 23 H 1.09000 * 110.75698 * 38.31067 * 13 11 10 24 24 H 1.09002 * 110.48578 * 203.38190 * 14 13 11 25 25 H 1.08998 * 110.60430 * 80.79077 * 14 13 11 26 26 H 1.09002 * 110.02957 * 264.32709 * 15 14 13 27 27 H 1.08996 * 110.03427 * 142.89930 * 15 14 13 28 28 H 1.09003 * 110.03622 * 240.71485 * 16 15 14 29 29 H 1.09005 * 110.03465 * 119.28158 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6526 0.7001 6 1 3.5473 1.4401 0.7000 7 6 2.0091 -1.2006 -0.0005 8 1 1.4690 -2.1359 -0.0005 9 8 3.3583 -1.2006 -0.0011 10 6 4.0071 -2.4738 -0.0010 11 6 5.5239 -2.2733 -0.0010 12 7 5.9247 -1.3735 -1.0907 13 6 5.9969 -1.7156 1.3643 14 6 7.4846 -2.1444 1.4117 15 6 7.4944 -3.5477 0.7712 16 6 6.2478 -3.6298 -0.1270 17 1 -0.4850 0.8401 -0.0004 18 1 3.7138 -3.0310 -0.8908 19 1 3.7145 -3.0306 0.8891 20 1 5.4556 -0.4834 -1.0158 21 1 6.9264 -1.2537 -1.1108 22 1 5.9069 -0.6296 1.3901 23 1 5.4377 -2.1703 2.1820 24 1 7.8349 -2.1931 2.4427 25 1 8.1006 -1.4565 0.8326 26 1 7.4469 -4.3123 1.5467 27 1 8.3955 -3.6785 0.1722 28 1 5.5952 -4.4342 0.2124 29 1 6.5439 -3.8002 -1.1621 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070875748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:52 Heat of formation + Delta-G solvation = -74.747265 kcal Electronic energy + Delta-G solvation = -11723.134022 eV Core-core repulsion = 9644.936387 eV Total energy + Delta-G solvation = -2078.197634 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.15457 -37.91318 -34.17750 -33.06136 -29.89377 -29.39726 -26.73442 -24.67401 -21.38899 -20.35968 -19.57579 -17.65333 -16.92783 -16.57872 -15.80620 -15.69684 -15.27022 -14.62929 -14.25730 -14.22571 -13.65698 -12.91726 -12.45187 -12.22076 -12.17832 -12.03819 -11.92672 -11.66249 -11.53662 -11.41288 -11.27375 -10.36948 -9.51627 -8.27774 -5.97721 1.37404 1.42259 1.58632 2.43279 3.04785 3.29531 3.52339 3.66082 3.94998 4.03923 4.38712 4.51675 4.56964 4.69377 4.71241 4.81134 4.89318 4.96669 5.08484 5.12256 5.26384 5.39228 5.47614 5.57011 6.13436 6.30908 6.71123 7.11263 7.80293 8.88595 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.063981 B = 0.011392 C = 0.010608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.521712 B = 2457.332113 C = 2638.947964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.016 4.016 3 Si 0.982 3.018 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.358 4.358 8 H 0.042 0.958 9 O -0.336 6.336 10 C 0.091 3.909 11 C 0.121 3.879 12 N -0.833 5.833 13 C -0.151 4.151 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.111 4.111 17 H 0.274 0.726 18 H 0.022 0.978 19 H 0.029 0.971 20 H 0.341 0.659 21 H 0.347 0.653 22 H 0.050 0.950 23 H 0.060 0.940 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.943 -3.612 1.941 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.209 4.209 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.437 4.437 8 H 0.060 0.940 9 O -0.251 6.251 10 C 0.014 3.986 11 C 0.028 3.972 12 N -0.363 5.363 13 C -0.191 4.191 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.149 4.149 17 H 0.083 0.917 18 H 0.040 0.960 19 H 0.047 0.953 20 H 0.154 0.846 21 H 0.161 0.839 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.632 -3.919 1.446 17.149 hybrid contribution -0.347 0.883 0.733 1.199 sum 16.285 -3.035 2.179 16.708 Atomic orbital electron populations 1.69813 1.07091 1.28458 1.55026 1.25246 0.95810 1.02134 0.97688 0.85024 0.78497 0.77287 0.78602 1.19667 1.20850 1.18394 1.20348 0.80281 0.94011 1.49050 0.93999 1.85082 1.18151 1.27920 1.93990 1.22392 0.92206 0.86182 0.97868 1.21645 0.91107 0.94801 0.89691 1.58774 1.12108 1.18312 1.47153 1.23220 0.97790 1.00054 0.98019 1.22354 0.94406 0.97075 1.01687 1.22113 0.97383 0.97065 0.98761 1.22173 0.96990 0.94388 1.01364 0.91721 0.95961 0.95279 0.84551 0.83894 0.93106 0.92115 0.90443 0.90885 0.90799 0.89942 0.91430 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.34 13.97 21.61 0.30 -61.04 15 2 C -0.02 -0.99 5.49 84.82 0.47 -0.52 15 3 Si 0.98 48.22 28.62 68.60 1.96 50.19 15 4 H -0.27 -12.83 7.11 99.48 0.71 -12.12 15 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.26 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.36 -22.07 10.35 67.91 0.70 -21.37 15 8 H 0.04 2.79 8.00 -2.91 -0.02 2.76 15 9 O -0.34 -17.84 7.70 -81.91 -0.63 -18.47 15 10 C 0.09 3.97 5.03 71.98 0.36 4.33 15 11 C 0.12 3.99 0.92 4.60 0.00 4.00 15 12 N -0.83 -26.87 8.95 -147.35 -1.32 -28.19 15 13 C -0.15 -4.58 5.92 31.89 0.19 -4.39 15 14 C -0.12 -2.50 6.49 31.67 0.21 -2.29 15 15 C -0.12 -2.25 6.80 31.32 0.21 -2.04 15 16 C -0.11 -2.85 6.06 31.32 0.19 -2.66 15 17 H 0.27 16.27 8.31 -92.71 -0.77 15.50 15 18 H 0.02 1.01 8.14 -2.38 -0.02 0.99 15 19 H 0.03 1.26 8.02 -2.39 -0.02 1.24 15 20 H 0.34 12.44 8.28 -89.70 -0.74 11.70 15 21 H 0.35 8.80 8.30 -89.69 -0.74 8.06 15 22 H 0.05 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.06 1.94 7.96 -2.39 -0.02 1.92 15 24 H 0.08 1.44 8.14 -2.39 -0.02 1.42 15 25 H 0.07 1.39 7.81 -2.39 -0.02 1.37 15 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 28 H 0.07 1.74 7.84 -2.39 -0.02 1.72 15 29 H 0.08 1.94 8.05 -2.38 -0.02 1.93 15 Total: -1.00 -68.24 240.90 2.30 -65.94 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.35 Total: 16.52 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 2.33 Total: -24.95 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -1.02 Total: -89.23 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.63 Total: -18.47 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.96 Total: 50.19 kcal Total: -68.24 2.30 -65.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070875748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.805 kcal (2) G-P(sol) polarization free energy of solvation -68.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds