Wall clock time and date at job start Mon Mar 30 2020 01:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86789 * 120.00516 * 2 1 4 4 H 1.48503 * 109.47497 * 239.99970 * 3 2 1 5 5 H 1.48507 * 109.46936 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47385 * 119.99731 * 3 2 1 7 7 C 1.37888 * 119.99409 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99531 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99830 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46822 * 180.02562 * 9 7 2 11 11 C 1.36318 * 121.37966 * 270.25674 * 10 9 7 12 12 C 1.32566 * 116.70193 * 180.31458 * 11 10 9 13 13 S 1.77229 * 105.32429 * 359.72182 * 12 11 10 14 14 C 1.34244 * 121.38149 * 90.02593 * 10 9 7 15 15 O 1.21833 * 127.05447 * 0.02562 * 14 10 9 16 16 H 0.97002 * 119.99383 * 359.97438 * 1 2 3 17 17 H 1.08999 * 109.47042 * 60.00869 * 9 7 2 18 18 H 1.08994 * 109.47985 * 299.99875 * 9 7 2 19 19 H 1.07997 * 121.64714 * 0.02562 * 11 10 9 20 20 H 1.08001 * 127.33242 * 179.74232 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6680 -4.1490 -1.1643 12 6 3.5211 -5.1578 -1.0562 13 16 3.7293 -5.4106 0.6855 14 6 2.6566 -4.1445 1.1455 15 8 2.3649 -3.8047 2.2786 16 1 -0.4849 0.8401 0.0004 17 1 0.6239 -2.5567 -0.8904 18 1 0.6245 -2.5572 0.8896 19 1 2.3533 -3.7735 -2.1268 20 1 3.9897 -5.7081 -1.8587 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070914457.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:48 Heat of formation + Delta-G solvation = -8.889274 kcal Electronic energy + Delta-G solvation = -9116.505054 eV Core-core repulsion = 7212.249918 eV Total energy + Delta-G solvation = -1904.255136 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -39.85010 -36.53930 -33.24937 -30.70328 -27.55629 -24.52340 -22.51877 -19.85480 -17.96813 -16.86492 -16.12654 -14.99202 -14.62262 -14.21045 -13.74577 -13.10389 -12.53862 -11.67740 -11.58446 -11.05826 -10.84216 -10.69522 -10.35602 -9.94352 -9.26677 -8.71427 -8.64917 -7.41273 -6.27322 -4.35164 1.60559 1.98947 2.38920 3.00776 3.22297 3.26732 3.30803 3.78469 4.28734 5.07943 5.45133 5.82011 5.94547 6.63689 6.90520 7.06903 7.66165 7.71059 7.87262 8.13892 8.67745 9.31562 10.81101 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.065996 B = 0.011878 C = 0.011615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.169022 B = 2356.771703 C = 2410.020064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.233 3.767 10 N -0.518 5.518 11 C 0.105 3.895 12 C -0.270 4.270 13 S -0.062 6.062 14 C 0.489 3.511 15 O -0.476 6.476 16 H 0.268 0.732 17 H 0.049 0.951 18 H 0.053 0.947 19 H 0.175 0.825 20 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.721 -7.163 -4.263 9.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.112 3.888 10 N -0.235 5.235 11 C -0.027 4.027 12 C -0.409 4.409 13 S 0.177 5.823 14 C 0.170 3.830 15 O -0.356 6.356 16 H 0.078 0.922 17 H 0.067 0.933 18 H 0.071 0.929 19 H 0.192 0.808 20 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 5.018 -7.616 -2.802 9.541 hybrid contribution -0.322 1.879 -0.863 2.093 sum 4.696 -5.736 -3.665 8.270 Atomic orbital electron populations 1.69912 1.06092 1.27789 1.48913 1.24934 0.94971 0.99525 0.94250 0.86417 0.79476 0.81864 0.78945 1.19926 1.20902 1.19907 1.21259 0.93533 0.90016 1.53345 0.91964 1.19790 0.87205 0.81820 1.00007 1.46595 1.40552 1.32328 1.04015 1.20944 0.95742 0.94073 0.91984 1.24802 1.11548 1.07633 0.96870 1.84657 1.53111 1.40619 1.03923 1.21353 0.86535 0.87668 0.87461 1.90891 1.61257 1.64419 1.19022 0.92188 0.93287 0.92920 0.80787 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 14 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 14 3 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 14 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 14 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 14 6 H -0.27 -6.47 7.11 56.52 0.40 -6.06 14 7 C -0.54 -14.96 9.39 -34.44 -0.32 -15.28 14 8 H 0.06 1.73 7.81 -52.49 -0.41 1.32 14 9 C 0.23 5.88 5.37 -5.19 -0.03 5.85 14 10 N -0.52 -11.27 2.59 -123.22 -0.32 -11.59 14 11 C 0.11 1.78 10.52 -17.47 -0.18 1.59 14 12 C -0.27 -3.94 11.55 28.82 0.33 -3.61 14 13 S -0.06 -1.08 22.97 -107.50 -2.47 -3.55 14 14 C 0.49 11.04 8.27 53.82 0.45 11.48 14 15 O -0.48 -12.38 17.55 5.07 0.09 -12.29 14 16 H 0.27 7.21 8.31 -40.82 -0.34 6.87 14 17 H 0.05 1.20 8.07 -51.93 -0.42 0.78 14 18 H 0.05 1.47 7.80 -51.93 -0.41 1.07 14 19 H 0.18 2.46 8.06 -52.49 -0.42 2.04 14 20 H 0.18 1.92 8.06 -52.49 -0.42 1.50 14 LS Contribution 205.91 15.07 3.10 3.10 Total: -1.00 -30.42 205.91 -4.95 -35.37 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -1.21 Total: -4.39 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 0.15 Total: 1.78 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.42 Total: -36.18 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.47 Total: -3.55 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -30.42 -4.95 -35.37 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070914457.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.478 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds