Wall clock time and date at job start Mon Mar 30 2020 01:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.77311 * 127.44597 * 2 1 4 4 C 1.77233 * 94.72601 * 180.02562 * 3 2 1 5 5 O 1.21711 * 127.04206 * 179.97438 * 4 3 2 6 6 N 1.34178 * 105.91661 * 359.74541 * 4 3 2 7 7 H 0.97002 * 121.11824 * 180.21861 * 6 4 3 8 8 C 1.36781 * 117.76400 * 0.46899 * 6 4 3 9 9 C 1.40127 * 121.75699 * 179.74460 * 8 6 4 10 10 H 1.08001 * 119.99692 * 157.27440 * 9 8 6 11 11 C 1.39865 * 119.99952 * 336.99937 * 9 8 6 12 12 N 1.30983 * 119.99908 * 349.16186 * 11 9 8 13 13 Si 1.86803 * 119.99779 * 169.15577 * 11 9 8 14 14 H 1.48503 * 109.46787 * 60.00101 * 13 11 9 15 15 H 1.48503 * 109.47035 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47224 * 300.00122 * 13 11 9 17 17 H 1.09001 * 109.47204 * 269.97472 * 1 2 3 18 18 H 1.08995 * 109.47373 * 29.97518 * 1 2 3 19 19 H 1.09006 * 109.47330 * 149.97960 * 1 2 3 20 20 H 0.96998 * 119.99848 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5851 1.4077 0.0000 4 6 4.0762 0.4497 -0.0008 5 8 5.2182 0.8707 -0.0015 6 7 3.6883 -0.8348 0.0047 7 1 4.3384 -1.5547 0.0086 8 6 2.3455 -1.0949 -0.0006 9 6 1.8480 -2.4049 -0.0008 10 1 0.8482 -2.6028 0.3566 11 6 2.6440 -3.4551 -0.4692 12 7 3.7625 -3.1980 -1.1004 13 14 2.1121 -5.2246 -0.1943 14 1 0.7972 -5.4530 -0.8455 15 1 3.1212 -6.1419 -0.7823 16 1 1.9948 -5.4856 1.2629 17 1 -0.3634 -0.0005 1.0277 18 1 -0.3634 0.8902 -0.5134 19 1 -0.3634 -0.8898 -0.5142 20 1 4.3144 -3.9264 -1.4256 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082407066.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:08 Heat of formation + Delta-G solvation = -54.449474 kcal Electronic energy + Delta-G solvation = -9207.685138 eV Core-core repulsion = 7301.454363 eV Total energy + Delta-G solvation = -1906.230774 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.85378 -38.26444 -35.06233 -32.88754 -29.34984 -26.17621 -24.69333 -20.94362 -20.03485 -18.23900 -17.63273 -16.82856 -16.45435 -15.63642 -14.86909 -14.04493 -13.92818 -13.48864 -13.07930 -12.99471 -12.94613 -12.29038 -12.14049 -11.35960 -11.19783 -10.83529 -10.08554 -8.97592 -8.66374 -6.58294 0.40309 0.72752 1.31587 1.41768 1.55636 1.66934 1.87954 2.17399 2.66941 3.08291 4.66752 4.99542 5.05243 5.15940 5.27742 5.53308 5.68922 5.89904 6.15085 6.47227 6.77231 6.95296 8.10383 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.051668 B = 0.016057 C = 0.012559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.791936 B = 1743.359767 C = 2228.997860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 C -0.411 4.411 3 S -0.093 6.093 4 C 0.485 3.515 5 O -0.552 6.552 6 N -0.619 5.619 7 H 0.415 0.585 8 C 0.259 3.741 9 C -0.467 4.467 10 H 0.115 0.885 11 C 0.034 3.966 12 N -0.851 5.851 13 Si 1.006 2.994 14 H -0.253 1.253 15 H -0.273 1.273 16 H -0.256 1.256 17 H 0.049 0.951 18 H 0.053 0.947 19 H 0.064 0.936 20 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.048 -3.358 1.359 6.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.528 4.528 3 S 0.142 5.858 4 C 0.168 3.832 5 O -0.440 6.440 6 N -0.263 5.263 7 H 0.259 0.741 8 C 0.151 3.849 9 C -0.501 4.501 10 H 0.133 0.867 11 C -0.180 4.180 12 N -0.480 5.480 13 Si 0.825 3.175 14 H -0.177 1.177 15 H -0.198 1.198 16 H -0.180 1.180 17 H 0.068 0.932 18 H 0.072 0.928 19 H 0.083 0.917 20 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.482 -1.794 1.241 4.985 hybrid contribution 0.829 -2.073 -0.104 2.235 sum -3.654 -3.867 1.137 5.440 Atomic orbital electron populations 1.19417 0.85958 1.01008 1.00299 1.23692 0.98182 0.87648 1.43306 1.84525 1.00677 1.15599 1.85027 1.22474 0.92916 0.86058 0.81796 1.90741 1.20751 1.74206 1.58268 1.44169 1.09859 1.07856 1.64434 0.74062 1.17256 0.79743 0.95788 0.92065 1.19363 1.03064 0.88780 1.38872 0.86676 1.27094 0.93595 1.07182 0.90167 1.69418 1.13103 1.37933 1.27527 0.84848 0.79266 0.73381 0.79974 1.17654 1.19788 1.17991 0.93212 0.92782 0.91740 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.28 10.01 71.24 0.71 0.44 14 2 C -0.41 -18.97 6.88 25.61 0.18 -18.79 14 3 S -0.09 -4.29 23.17 -56.49 -1.31 -5.60 14 4 C 0.49 25.13 9.06 129.88 1.18 26.30 14 5 O -0.55 -30.35 18.05 -4.38 -0.08 -30.43 14 6 N -0.62 -31.65 4.95 -314.81 -1.56 -33.21 14 7 H 0.42 21.28 6.52 -92.71 -0.60 20.67 14 8 C 0.26 12.89 6.28 38.75 0.24 13.13 14 9 C -0.47 -21.80 8.64 23.12 0.20 -21.60 14 10 H 0.12 4.94 7.37 -2.91 -0.02 4.92 14 11 C 0.03 1.50 5.36 85.21 0.46 1.96 14 12 N -0.85 -39.83 11.00 21.82 0.24 -39.59 14 13 Si 1.01 33.14 29.58 68.60 2.03 35.17 14 14 H -0.25 -7.99 7.11 99.48 0.71 -7.28 14 15 H -0.27 -8.79 7.11 99.48 0.71 -8.08 14 16 H -0.26 -8.20 7.11 99.48 0.71 -7.49 14 17 H 0.05 1.68 8.14 -2.39 -0.02 1.66 14 18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 14 19 H 0.06 2.31 7.55 -2.38 -0.02 2.29 14 20 H 0.30 12.76 8.30 -92.71 -0.77 12.00 14 Total: -1.00 -54.69 200.31 2.96 -51.73 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.67 Total: 20.49 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 2.97 Total: 1.44 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -1.32 Total: -72.80 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.08 Total: -30.43 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -1.31 Total: -5.60 kcal Total: -54.69 2.96 -51.73 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082407066.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.716 kcal (2) G-P(sol) polarization free energy of solvation -54.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds