Wall clock time and date at job start Mon Mar 30 2020 02:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99641 * 2 1 4 4 H 1.48507 * 109.46831 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47142 * 299.98978 * 3 2 1 6 6 H 1.48498 * 109.47181 * 59.99643 * 3 2 1 7 7 C 1.38810 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99987 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00341 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00444 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47748 * 179.97438 * 10 9 7 12 12 C 1.53175 * 109.54388 * 294.55931 * 11 10 9 13 13 C 1.53094 * 109.16661 * 183.14993 * 12 11 10 14 14 O 1.42898 * 109.41211 * 57.60371 * 13 12 11 15 15 C 1.42897 * 114.10001 * 298.84343 * 14 13 12 16 16 C 1.53089 * 109.41656 * 61.16248 * 15 14 13 17 17 H 0.96994 * 120.00671 * 0.02562 * 1 2 3 18 18 H 0.97006 * 119.99987 * 359.97438 * 9 7 2 19 19 H 1.09002 * 109.47271 * 60.00048 * 10 9 7 20 20 H 1.09007 * 109.47188 * 299.99852 * 10 9 7 21 21 H 1.09004 * 109.61242 * 54.77350 * 11 10 9 22 22 H 1.09004 * 109.52259 * 303.05258 * 12 11 10 23 23 H 1.09006 * 109.52330 * 63.24092 * 12 11 10 24 24 H 1.09006 * 109.47665 * 297.62062 * 13 12 11 25 25 H 1.08993 * 109.47955 * 177.58818 * 13 12 11 26 26 H 1.09002 * 109.48425 * 301.17758 * 15 14 13 27 27 H 1.09001 * 109.49443 * 181.15303 * 15 14 13 28 28 H 1.08997 * 109.52675 * 182.48845 * 16 15 14 29 29 H 1.08995 * 109.52428 * 62.29514 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8912 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 6 1.0640 -4.8197 0.0021 12 6 0.2745 -4.8185 1.3147 13 6 -0.6610 -6.0302 1.3396 14 8 0.1066 -7.2260 1.1884 15 6 0.8288 -7.3041 -0.0421 16 6 1.8241 -6.1437 -0.1226 17 1 -0.4851 0.8399 -0.0004 18 1 0.3556 -2.3881 0.0005 19 1 2.6841 -3.7141 0.8922 20 1 2.6855 -3.7149 -0.8879 21 1 0.3764 -4.7136 -0.8370 22 1 0.9658 -4.8748 2.1556 23 1 -0.3130 -3.9031 1.3855 24 1 -1.3780 -5.9526 0.5223 25 1 -1.1942 -6.0581 2.2898 26 1 0.1313 -7.2433 -0.8775 27 1 1.3687 -8.2499 -0.0876 28 1 2.3448 -6.1761 -1.0796 29 1 2.5467 -6.2267 0.6892 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082544530.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:22 Heat of formation + Delta-G solvation = -74.191786 kcal Electronic energy + Delta-G solvation = -11483.487190 eV Core-core repulsion = 9405.313643 eV Total energy + Delta-G solvation = -2078.173547 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33449 -37.11713 -34.82734 -32.40243 -31.93975 -28.14834 -25.41199 -24.40476 -22.97598 -21.01084 -19.20904 -17.04445 -16.90154 -16.70455 -15.89309 -15.56275 -15.31777 -15.11947 -14.27865 -13.83991 -13.33066 -13.05213 -12.85105 -12.73918 -12.24362 -12.10599 -11.93888 -11.83539 -11.42275 -11.14050 -10.96100 -10.41313 -9.02348 -7.97790 -5.26788 1.46085 1.47075 1.57376 2.54267 3.00173 3.35742 3.73089 3.82245 3.96412 4.10161 4.28249 4.34716 4.50306 4.60566 4.75286 4.81929 4.85241 4.93021 5.05062 5.06344 5.21231 5.32118 5.44742 5.50505 6.25017 6.28590 7.31094 8.06707 8.31004 9.26205 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.087950 B = 0.008507 C = 0.008022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.284553 B = 3290.776239 C = 3489.694701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.745 5.745 10 C 0.157 3.843 11 C -0.091 4.091 12 C -0.142 4.142 13 C 0.066 3.934 14 O -0.400 6.400 15 C 0.060 3.940 16 C -0.141 4.141 17 H 0.252 0.748 18 H 0.374 0.626 19 H 0.015 0.985 20 H 0.020 0.980 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.086 0.914 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.340 -13.015 0.186 13.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.030 3.970 11 C -0.110 4.110 12 C -0.180 4.180 13 C -0.011 4.011 14 O -0.319 6.319 15 C -0.016 4.016 16 C -0.179 4.179 17 H 0.061 0.939 18 H 0.207 0.793 19 H 0.033 0.967 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.122 0.878 26 H 0.075 0.925 27 H 0.133 0.867 28 H 0.105 0.895 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.523 -13.073 0.323 13.165 hybrid contribution -0.024 1.512 -0.184 1.524 sum 1.499 -11.560 0.140 11.658 Atomic orbital electron populations 1.69817 1.06649 1.26123 1.59511 1.25582 0.96436 1.01146 1.03535 0.85044 0.78177 0.79580 0.76772 1.19095 1.21827 1.21894 1.19696 0.91519 0.85501 1.41333 0.90813 1.42589 1.05659 1.01155 1.89351 1.20835 0.93846 0.84932 0.97345 1.21288 0.97235 0.94747 0.97683 1.22105 0.99348 0.98821 0.97696 1.22607 0.92439 0.83313 1.02703 1.87862 1.63965 1.40029 1.40085 1.22729 0.93675 0.99057 0.86159 1.22149 0.98806 0.93513 1.03464 0.93901 0.79333 0.96657 0.96167 0.91765 0.92148 0.92470 0.92602 0.87765 0.92509 0.86679 0.89514 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.15 13.06 21.65 0.28 -59.87 15 2 C -0.07 -4.37 5.50 84.86 0.47 -3.91 15 3 Si 0.98 46.70 29.55 68.60 2.03 48.73 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 15 6 H -0.29 -13.90 7.11 99.48 0.71 -13.19 15 7 C -0.25 -14.29 9.99 84.03 0.84 -13.45 15 8 H 0.07 4.09 7.83 -2.91 -0.02 4.06 15 9 N -0.74 -39.06 5.36 -343.46 -1.84 -40.90 15 10 C 0.16 6.52 5.66 86.38 0.49 7.01 15 11 C -0.09 -3.00 2.31 -10.68 -0.02 -3.03 15 12 C -0.14 -4.64 5.26 30.68 0.16 -4.48 15 13 C 0.07 1.77 6.84 72.01 0.49 2.26 15 14 O -0.40 -10.86 10.76 -148.98 -1.60 -12.47 15 15 C 0.06 1.34 6.84 72.01 0.49 1.83 15 16 C -0.14 -3.59 5.42 30.68 0.17 -3.43 15 17 H 0.25 15.04 8.31 -92.71 -0.77 14.27 15 18 H 0.37 20.67 6.90 -92.70 -0.64 20.03 15 19 H 0.02 0.65 8.14 -2.39 -0.02 0.63 15 20 H 0.02 0.84 8.14 -2.38 -0.02 0.82 15 21 H 0.06 2.20 8.14 -2.38 -0.02 2.18 15 22 H 0.06 2.03 8.14 -2.38 -0.02 2.01 15 23 H 0.06 2.15 7.31 -2.38 -0.02 2.14 15 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 15 25 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 15 27 H 0.12 1.98 8.14 -2.39 -0.02 1.96 15 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 Total: -1.00 -64.94 239.65 2.42 -62.51 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.48 Total: 19.18 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 3.08 Total: -17.19 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -1.56 Total: -100.77 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.60 Total: -12.47 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -64.94 2.42 -62.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082544530.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.680 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds