Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48497 * 109.46999 * 274.71916 * 3 2 1 5 5 H 1.48498 * 109.46874 * 34.72332 * 3 2 1 6 6 H 1.48503 * 109.46775 * 154.72421 * 3 2 1 7 7 C 1.37880 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99684 * 354.72527 * 7 2 1 9 9 C 1.50700 * 119.99922 * 175.00327 * 7 2 1 10 10 C 1.52994 * 115.54907 * 98.46932 * 9 7 2 11 11 O 1.42902 * 109.47367 * 303.24519 * 10 9 7 12 12 C 1.42898 * 114.00026 * 184.90654 * 11 10 9 13 13 C 1.53005 * 109.47133 * 184.92549 * 12 11 10 14 14 N 1.46894 * 109.47033 * 64.33632 * 13 12 11 15 15 C 1.52997 * 117.49722 * 312.76111 * 9 7 2 16 16 C 1.52994 * 117.49840 * 244.13890 * 9 7 2 17 17 H 0.96998 * 119.99571 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.47205 * 63.24322 * 10 9 7 19 19 H 1.09001 * 109.47119 * 183.24628 * 10 9 7 20 20 H 1.09003 * 109.47454 * 304.92654 * 12 11 10 21 21 H 1.08998 * 109.47162 * 64.92734 * 12 11 10 22 22 H 1.08993 * 109.46958 * 184.33936 * 13 12 11 23 23 H 1.09004 * 109.46570 * 304.34058 * 13 12 11 24 24 H 1.00901 * 110.99875 * 56.04814 * 14 13 12 25 25 H 1.00895 * 111.00289 * 180.02562 * 14 13 12 26 26 H 1.08998 * 117.50328 * 0.02562 * 15 9 7 27 27 H 1.09004 * 117.49929 * 145.02164 * 15 9 7 28 28 H 1.08999 * 117.50444 * 214.98041 * 16 9 7 29 29 H 1.09007 * 117.49975 * 359.97438 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3970 2.1039 -1.3953 5 1 1.5002 2.6217 0.7975 6 1 3.5931 1.4132 0.5978 7 6 2.0045 -1.1941 0.0005 8 1 1.4678 -2.1274 0.0869 9 6 3.5072 -1.1967 -0.1131 10 6 4.2685 -1.3409 1.2061 11 8 3.8756 -0.2969 2.0994 12 6 4.6103 -0.2734 3.3248 13 6 4.0275 0.7982 4.2484 14 7 2.6510 0.4358 4.6115 15 6 4.1350 -0.3212 -1.1995 16 6 4.1204 -1.8430 -1.3569 17 1 -0.4849 0.8401 -0.0004 18 1 4.0392 -2.3078 1.6541 19 1 5.3398 -1.2730 1.0167 20 1 4.5406 -1.2474 3.8091 21 1 5.6556 -0.0448 3.1174 22 1 4.6345 0.8694 5.1508 23 1 4.0265 1.7594 3.7343 24 1 2.6174 -0.4809 5.0318 25 1 2.2435 1.1286 5.2212 26 1 3.4612 0.2570 -1.8318 27 1 5.0906 0.1524 -0.9745 28 1 5.0665 -2.3706 -1.2355 29 1 3.4370 -2.2668 -2.0928 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = -14.817165 kcal Electronic energy + Delta-G solvation = -11796.501366 eV Core-core repulsion = 9720.902496 eV Total energy + Delta-G solvation = -2075.598870 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.79181 -36.09082 -33.78838 -31.80480 -27.96746 -25.94082 -24.76964 -21.69249 -21.43425 -18.84417 -16.35331 -16.03201 -15.82928 -14.88061 -14.35501 -14.02370 -13.72257 -13.13496 -12.41378 -12.32092 -11.91151 -11.43067 -10.95623 -10.72119 -10.41751 -10.15255 -9.87992 -9.25585 -9.00671 -8.73920 -8.32664 -8.25177 -8.18710 -5.85467 -3.88329 3.53032 3.67095 3.87986 4.37481 4.77661 4.85358 5.11162 5.42862 5.46636 5.54342 5.68864 5.80386 5.97844 6.10815 6.14543 6.21317 6.39983 6.53184 6.55884 6.79602 7.16834 7.19192 7.43765 7.75459 7.93433 8.21766 8.69342 9.13247 9.81255 11.26063 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.018937 C = 0.014804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.155914 B = 1478.203723 C = 1890.929231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.088 3.912 3 Si 0.893 3.107 4 H -0.299 1.299 5 H -0.304 1.304 6 H -0.234 1.234 7 C -0.484 4.484 8 H 0.073 0.927 9 C 0.007 3.993 10 C 0.101 3.899 11 O -0.339 6.339 12 C 0.057 3.943 13 C 0.067 3.933 14 N -0.834 5.834 15 C -0.201 4.201 16 C -0.180 4.180 17 H 0.261 0.739 18 H 0.039 0.961 19 H 0.018 0.982 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.029 0.971 23 H 0.076 0.924 24 H 0.338 0.662 25 H 0.336 0.664 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 0.646 6.482 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.114 4.114 3 Si 0.723 3.277 4 H -0.227 1.227 5 H -0.232 1.232 6 H -0.157 1.157 7 C -0.521 4.521 8 H 0.091 0.909 9 C 0.006 3.994 10 C 0.025 3.975 11 O -0.257 6.257 12 C -0.021 4.021 13 C -0.064 4.064 14 N -0.364 5.364 15 C -0.238 4.238 16 C -0.217 4.217 17 H 0.070 0.930 18 H 0.058 0.942 19 H 0.036 0.964 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.094 0.906 24 H 0.151 0.849 25 H 0.148 0.852 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.512 0.940 5.664 11.110 hybrid contribution 0.964 0.709 1.066 1.602 sum 10.476 1.649 6.730 12.560 Atomic orbital electron populations 1.69916 1.06692 1.26928 1.50537 1.24895 0.94417 0.99257 0.92827 0.86670 0.82526 0.82542 0.75971 1.22664 1.23158 1.15743 1.20071 0.86231 0.94450 1.51318 0.90913 1.19341 0.95809 0.99227 0.84992 1.22134 0.94306 0.89730 0.91371 1.88301 1.59838 1.51691 1.25865 1.22410 0.94230 0.97534 0.87914 1.21753 0.89073 0.99463 0.96077 1.58413 1.19401 1.06639 1.51987 1.22920 1.01233 0.93212 1.06467 1.22897 1.00871 0.94627 1.03340 0.92965 0.94234 0.96426 0.94404 0.94309 0.95259 0.90601 0.84929 0.85195 0.89517 0.90949 0.91189 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.17 13.96 55.43 0.77 -28.40 15 2 C 0.09 2.71 5.46 -17.82 -0.10 2.61 15 3 Si 0.89 24.12 23.65 -169.99 -4.02 20.10 15 4 H -0.30 -7.91 6.98 56.52 0.39 -7.51 15 5 H -0.30 -8.39 7.11 56.52 0.40 -7.99 15 6 H -0.23 -6.06 5.23 56.52 0.30 -5.76 15 7 C -0.48 -14.34 9.26 -34.44 -0.32 -14.66 15 8 H 0.07 2.33 8.06 -52.49 -0.42 1.91 15 9 C 0.01 0.18 1.38 -155.67 -0.22 -0.04 15 10 C 0.10 2.21 5.80 37.15 0.22 2.43 15 11 O -0.34 -7.68 7.51 -35.23 -0.26 -7.95 15 12 C 0.06 0.97 6.22 37.16 0.23 1.21 15 13 C 0.07 1.04 7.17 -3.82 -0.03 1.01 15 14 N -0.83 -13.57 9.56 -10.37 -0.10 -13.67 15 15 C -0.20 -4.59 7.15 -26.73 -0.19 -4.78 15 16 C -0.18 -3.82 9.95 -26.74 -0.27 -4.08 15 17 H 0.26 7.98 8.31 -40.82 -0.34 7.64 15 18 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 19 H 0.02 0.34 8.10 -51.93 -0.42 -0.08 15 20 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 15 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 15 23 H 0.08 1.26 8.14 -51.93 -0.42 0.84 15 24 H 0.34 4.89 8.99 -39.29 -0.35 4.54 15 25 H 0.34 4.55 9.08 -39.29 -0.36 4.19 15 26 H 0.09 2.11 6.14 -51.93 -0.32 1.79 15 27 H 0.07 1.50 8.14 -51.93 -0.42 1.07 15 28 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 29 H 0.09 1.92 8.14 -51.93 -0.42 1.49 15 LS Contribution 240.21 15.07 3.62 3.62 Total: -1.00 -33.79 240.21 -5.16 -38.96 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.50 Total: 3.65 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -0.67 Total: -16.30 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.67 Total: -42.07 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.26 Total: -7.95 kcal Atomic # 14 Polarization: 24.12 SS G_CDS: -4.02 Total: 20.10 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.79 -5.16 -38.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.138 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds