Wall clock time and date at job start Mon Mar 30 2020 02:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00183 * 2 1 4 4 H 1.48497 * 109.46999 * 274.71916 * 3 2 1 5 5 H 1.48498 * 109.46874 * 34.72332 * 3 2 1 6 6 H 1.48503 * 109.46775 * 154.72421 * 3 2 1 7 7 C 1.37880 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99684 * 354.72527 * 7 2 1 9 9 C 1.50700 * 119.99922 * 175.00327 * 7 2 1 10 10 C 1.52994 * 115.54907 * 98.46932 * 9 7 2 11 11 O 1.42902 * 109.47367 * 303.24519 * 10 9 7 12 12 C 1.42898 * 114.00026 * 184.90654 * 11 10 9 13 13 C 1.53005 * 109.47133 * 184.92549 * 12 11 10 14 14 N 1.46894 * 109.47033 * 64.33632 * 13 12 11 15 15 C 1.52997 * 117.49722 * 312.76111 * 9 7 2 16 16 C 1.52994 * 117.49840 * 244.13890 * 9 7 2 17 17 H 0.96998 * 119.99571 * 0.02562 * 1 2 3 18 18 H 1.09004 * 109.47205 * 63.24322 * 10 9 7 19 19 H 1.09001 * 109.47119 * 183.24628 * 10 9 7 20 20 H 1.09003 * 109.47454 * 304.92654 * 12 11 10 21 21 H 1.08998 * 109.47162 * 64.92734 * 12 11 10 22 22 H 1.08993 * 109.46958 * 184.33936 * 13 12 11 23 23 H 1.09004 * 109.46570 * 304.34058 * 13 12 11 24 24 H 1.00901 * 110.99875 * 56.04814 * 14 13 12 25 25 H 1.00895 * 111.00289 * 180.02562 * 14 13 12 26 26 H 1.08998 * 117.50328 * 0.02562 * 15 9 7 27 27 H 1.09004 * 117.49929 * 145.02164 * 15 9 7 28 28 H 1.08999 * 117.50444 * 214.98041 * 16 9 7 29 29 H 1.09007 * 117.49975 * 359.97438 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3970 2.1039 -1.3953 5 1 1.5002 2.6217 0.7975 6 1 3.5931 1.4132 0.5978 7 6 2.0045 -1.1941 0.0005 8 1 1.4678 -2.1274 0.0869 9 6 3.5072 -1.1967 -0.1131 10 6 4.2685 -1.3409 1.2061 11 8 3.8756 -0.2969 2.0994 12 6 4.6103 -0.2734 3.3248 13 6 4.0275 0.7982 4.2484 14 7 2.6510 0.4358 4.6115 15 6 4.1350 -0.3212 -1.1995 16 6 4.1204 -1.8430 -1.3569 17 1 -0.4849 0.8401 -0.0004 18 1 4.0392 -2.3078 1.6541 19 1 5.3398 -1.2730 1.0167 20 1 4.5406 -1.2474 3.8091 21 1 5.6556 -0.0448 3.1174 22 1 4.6345 0.8694 5.1508 23 1 4.0265 1.7594 3.7343 24 1 2.6174 -0.4809 5.0318 25 1 2.2435 1.1286 5.2212 26 1 3.4612 0.2570 -1.8318 27 1 5.0906 0.1524 -0.9745 28 1 5.0665 -2.3706 -1.2355 29 1 3.4370 -2.2668 -2.0928 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854626.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:02 Heat of formation + Delta-G solvation = -41.693224 kcal Electronic energy + Delta-G solvation = -11797.666800 eV Core-core repulsion = 9720.902496 eV Total energy + Delta-G solvation = -2076.764304 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.43739 -37.70341 -35.11591 -34.10270 -29.35761 -27.84020 -26.66616 -23.34515 -22.76496 -20.81183 -18.37024 -17.54273 -17.18019 -16.71958 -16.13815 -15.57031 -15.12855 -14.69805 -14.62437 -13.82637 -13.51029 -13.07703 -12.78826 -12.61699 -12.03261 -11.94375 -11.75686 -11.30343 -10.89428 -10.55548 -10.41550 -9.96489 -9.43913 -8.20362 -6.25279 1.38023 1.50036 1.74301 2.54178 2.86978 3.20444 3.44716 3.74456 4.10896 4.29718 4.34143 4.35877 4.51152 4.53952 4.64663 4.73492 4.82898 4.86515 5.03834 5.09046 5.39611 5.48872 5.79993 6.32129 6.32995 6.67212 6.68819 6.86206 7.47258 8.95195 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.032133 B = 0.018937 C = 0.014804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.155914 B = 1478.203723 C = 1890.929231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.291 1.291 5 H -0.318 1.318 6 H -0.210 1.210 7 C -0.481 4.481 8 H 0.026 0.974 9 C -0.030 4.030 10 C 0.107 3.893 11 O -0.379 6.379 12 C 0.048 3.952 13 C 0.067 3.933 14 N -0.864 5.864 15 C -0.199 4.199 16 C -0.156 4.156 17 H 0.260 0.740 18 H 0.037 0.963 19 H 0.055 0.945 20 H 0.049 0.951 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.345 0.655 25 H 0.347 0.653 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.047 1.028 6.925 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.166 4.166 3 Si 0.782 3.218 4 H -0.219 1.219 5 H -0.247 1.247 6 H -0.132 1.132 7 C -0.518 4.518 8 H 0.044 0.956 9 C -0.030 4.030 10 C 0.031 3.969 11 O -0.299 6.299 12 C -0.029 4.029 13 C -0.064 4.064 14 N -0.397 5.397 15 C -0.236 4.236 16 C -0.193 4.193 17 H 0.068 0.932 18 H 0.055 0.945 19 H 0.073 0.927 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.088 0.912 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.161 0.839 26 H 0.084 0.916 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.630 1.303 6.111 14.091 hybrid contribution -0.026 0.474 0.952 1.064 sum 12.604 1.777 7.063 14.557 Atomic orbital electron populations 1.70062 1.08552 1.27592 1.53357 1.25727 0.94987 1.02863 0.93014 0.85730 0.82095 0.77935 0.76046 1.21902 1.24680 1.13215 1.20326 0.89568 0.92378 1.49556 0.95553 1.19365 0.93104 1.02770 0.87801 1.21988 0.95657 0.89632 0.89642 1.88218 1.61733 1.51965 1.27934 1.22739 0.95189 0.98777 0.86209 1.21809 0.89220 0.98127 0.97219 1.58416 1.20620 1.07656 1.52987 1.22950 1.01802 0.94119 1.04684 1.22947 1.01974 0.94064 1.00337 0.93155 0.94503 0.92689 0.93276 0.91649 0.91216 0.92105 0.84156 0.83912 0.91604 0.87811 0.86845 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.95 13.96 21.45 0.30 -63.65 15 2 C 0.03 1.93 5.46 84.66 0.46 2.39 15 3 Si 0.95 50.15 23.65 68.60 1.62 51.77 15 4 H -0.29 -14.78 6.98 99.48 0.69 -14.08 15 5 H -0.32 -17.26 7.11 99.48 0.71 -16.55 15 6 H -0.21 -10.15 5.23 99.48 0.52 -9.63 15 7 C -0.48 -29.00 9.26 25.60 0.24 -28.77 15 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 15 9 C -0.03 -1.39 1.38 -52.93 -0.07 -1.47 15 10 C 0.11 4.35 5.80 71.98 0.42 4.76 15 11 O -0.38 -16.20 7.51 -148.98 -1.12 -17.32 15 12 C 0.05 1.47 6.22 71.98 0.45 1.92 15 13 C 0.07 1.87 7.17 86.31 0.62 2.49 15 14 N -0.86 -26.89 9.56 -186.73 -1.79 -28.67 15 15 C -0.20 -8.37 7.15 30.59 0.22 -8.15 15 16 C -0.16 -6.10 9.95 30.59 0.30 -5.80 15 17 H 0.26 16.51 8.31 -92.71 -0.77 15.74 15 18 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 19 H 0.06 1.81 8.10 -2.39 -0.02 1.79 15 20 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 21 H 0.07 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.07 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.06 1.87 8.14 -2.38 -0.02 1.85 15 24 H 0.35 9.56 8.99 -89.69 -0.81 8.75 15 25 H 0.35 8.99 9.08 -89.70 -0.81 8.18 15 26 H 0.07 3.05 6.14 -2.39 -0.01 3.03 15 27 H 0.10 3.73 8.14 -2.38 -0.02 3.71 15 28 H 0.11 3.49 8.14 -2.39 -0.02 3.47 15 29 H 0.08 3.23 8.14 -2.38 -0.02 3.21 15 Total: -1.00 -74.44 240.21 0.97 -73.47 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.68 Total: 17.04 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 2.63 Total: -32.63 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -1.49 Total: -92.32 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -1.12 Total: -17.32 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 1.62 Total: 51.77 kcal Total: -74.44 0.97 -73.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854626.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.773 kcal (2) G-P(sol) polarization free energy of solvation -74.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds