Wall clock time and date at job start Mon Mar 30 2020 01:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 120.00494 * 2 1 4 4 H 1.48500 * 109.47055 * 266.27095 * 3 2 1 5 5 H 1.48505 * 109.47156 * 26.26453 * 3 2 1 6 6 H 1.48497 * 109.47451 * 146.27082 * 3 2 1 7 7 C 1.37886 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99693 * 353.69884 * 7 2 1 9 9 C 1.50694 * 119.99909 * 173.70056 * 7 2 1 10 10 H 1.08998 * 110.28986 * 352.90553 * 9 7 2 11 11 C 1.54379 * 110.32336 * 115.03853 * 9 7 2 12 12 N 1.48560 * 104.59617 * 142.84910 * 11 9 7 13 13 C 1.48570 * 104.22015 * 320.51435 * 12 11 9 14 14 C 1.54381 * 104.69565 * 39.42574 * 13 12 11 15 15 H 1.09004 * 110.32126 * 95.10524 * 14 13 12 16 16 C 1.50699 * 110.32086 * 217.30828 * 14 13 12 17 17 O 1.20829 * 120.00006 * 28.06604 * 16 14 13 18 18 O 1.34227 * 120.00291 * 208.07211 * 16 14 13 19 19 H 0.97001 * 119.99595 * 359.97438 * 1 2 3 20 20 H 1.09000 * 110.41063 * 24.07264 * 11 9 7 21 21 H 1.08999 * 110.50898 * 261.67280 * 11 9 7 22 22 H 1.00900 * 111.00027 * 80.06687 * 12 11 9 23 23 H 1.09004 * 110.40521 * 158.26259 * 13 12 11 24 24 H 1.09002 * 110.41136 * 280.58707 * 13 12 11 25 25 H 0.96700 * 117.00052 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.5756 2.0007 -1.3971 5 1 1.4095 2.6742 0.6196 6 1 3.5051 1.4641 0.7774 7 6 2.0045 -1.1941 -0.0005 8 1 1.4693 -2.1267 0.1017 9 6 3.5046 -1.1980 -0.1437 10 1 3.8662 -0.1929 -0.3604 11 6 4.1646 -1.7398 1.1424 12 7 5.3268 -2.5309 0.6622 13 6 4.8205 -3.2238 -0.5506 14 6 3.9343 -2.1766 -1.2587 15 1 4.5067 -1.6511 -2.0233 16 6 2.7274 -2.8400 -1.8704 17 8 2.2844 -3.8539 -1.3850 18 8 2.1446 -2.3048 -2.9547 19 1 -0.4849 0.8401 0.0004 20 1 3.4689 -2.3785 1.6867 21 1 4.4997 -0.9179 1.7751 22 1 6.1051 -1.9296 0.4367 23 1 5.6496 -3.5179 -1.1943 24 1 4.2292 -4.0958 -0.2713 25 1 1.3730 -2.7659 -3.3111 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233394.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:45 Heat of formation + Delta-G solvation = -121.130105 kcal Electronic energy + Delta-G solvation = -11775.432258 eV Core-core repulsion = 9559.390218 eV Total energy + Delta-G solvation = -2216.042040 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.38222 -38.92378 -36.78747 -34.81198 -31.74636 -30.41692 -26.25077 -24.31388 -22.46734 -20.60171 -19.63889 -18.65656 -17.51190 -17.27834 -16.11080 -16.08574 -15.10962 -14.63969 -14.50013 -14.27163 -13.39959 -12.88872 -12.66674 -12.53303 -12.31926 -12.02601 -11.88779 -11.68147 -11.54056 -10.95540 -10.78026 -9.66548 -8.33221 -6.39935 1.35163 1.37652 1.46992 1.54007 2.32037 2.44965 2.99002 3.40390 4.04850 4.11149 4.18435 4.53480 4.62954 4.72535 4.77954 5.07467 5.20232 5.29565 5.42886 5.75388 5.84253 6.24731 6.59784 6.68336 7.23149 7.26918 8.83107 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.036509 B = 0.020304 C = 0.015457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.754621 B = 1378.688633 C = 1810.988506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.238 1.238 7 C -0.524 4.524 8 H 0.028 0.972 9 C -0.008 4.008 10 H 0.062 0.938 11 C 0.048 3.952 12 N -0.663 5.663 13 C 0.058 3.942 14 C -0.120 4.120 15 H 0.117 0.883 16 C 0.520 3.480 17 O -0.568 6.568 18 O -0.516 6.516 19 H 0.267 0.733 20 H 0.051 0.949 21 H 0.080 0.920 22 H 0.348 0.652 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.879 0.183 -3.993 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.773 3.227 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.162 1.162 7 C -0.562 4.562 8 H 0.046 0.954 9 C -0.028 4.028 10 H 0.080 0.920 11 C -0.082 4.082 12 N -0.290 5.290 13 C -0.072 4.072 14 C -0.141 4.141 15 H 0.136 0.864 16 C 0.366 3.634 17 O -0.460 6.460 18 O -0.328 6.328 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.098 0.902 22 H 0.165 0.835 23 H 0.128 0.872 24 H 0.084 0.916 25 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 10.934 -0.355 -3.201 11.398 hybrid contribution -1.314 1.021 -0.815 1.853 sum 9.620 0.666 -4.015 10.446 Atomic orbital electron populations 1.70079 1.08602 1.28320 1.51086 1.26091 0.95502 1.03345 0.93224 0.85698 0.79491 0.77916 0.79618 1.18803 1.21705 1.16154 1.21100 0.90990 0.93190 1.50921 0.95413 1.20516 0.95289 0.95270 0.91769 0.91966 1.23145 0.91510 0.96217 0.97305 1.63292 1.07596 1.30280 1.27838 1.23001 0.97383 0.95892 0.90915 1.22799 0.92453 0.99318 0.99555 0.86445 1.23153 0.84215 0.80276 0.75744 1.90570 1.65503 1.28128 1.61839 1.84475 1.46738 1.57755 1.43797 0.92407 0.93069 0.90159 0.83515 0.87235 0.91602 0.72820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.87 13.96 21.45 0.30 -57.57 15 2 C 0.02 0.95 5.47 84.66 0.46 1.42 15 3 Si 0.95 41.65 26.93 68.60 1.85 43.50 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.29 -12.85 7.11 99.48 0.71 -12.14 15 6 H -0.24 -9.28 6.84 99.48 0.68 -8.60 15 7 C -0.52 -29.03 7.25 25.60 0.19 -28.85 15 8 H 0.03 1.81 6.92 -2.91 -0.02 1.79 15 9 C -0.01 -0.34 2.90 -10.58 -0.03 -0.37 15 10 H 0.06 2.51 4.99 -2.39 -0.01 2.50 15 11 C 0.05 1.87 7.00 86.45 0.61 2.47 15 12 N -0.66 -21.00 7.63 -500.82 -3.82 -24.82 15 13 C 0.06 1.90 6.95 86.45 0.60 2.50 15 14 C -0.12 -4.50 3.56 -10.58 -0.04 -4.54 15 15 H 0.12 3.60 8.14 -2.38 -0.02 3.58 15 16 C 0.52 22.66 5.43 71.24 0.39 23.05 15 17 O -0.57 -28.20 15.79 21.95 0.35 -27.85 15 18 O -0.52 -20.26 13.42 -51.39 -0.69 -20.95 15 19 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 20 H 0.05 2.31 7.86 -2.39 -0.02 2.29 15 21 H 0.08 2.79 8.14 -2.39 -0.02 2.77 15 22 H 0.35 8.67 8.92 -89.69 -0.80 7.87 15 23 H 0.11 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.07 2.56 6.87 -2.39 -0.02 2.54 15 25 H 0.41 12.98 9.10 -74.06 -0.67 12.31 15 Total: -1.00 -70.11 214.75 -0.12 -70.23 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.28 Total: 21.78 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 2.17 Total: -4.31 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -3.52 Total: -82.39 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.34 Total: -48.81 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.85 Total: 43.50 kcal Total: -70.11 -0.12 -70.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233394.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.900 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds