Wall clock time and date at job start Mon Mar 30 2020 02:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00408 * 2 1 4 4 H 1.48497 * 109.47048 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46947 * 300.00256 * 3 2 1 6 6 H 1.48497 * 109.46778 * 60.00447 * 3 2 1 7 7 C 1.37879 * 119.99469 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99983 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00367 * 359.97438 * 7 2 1 10 10 H 1.09004 * 108.82574 * 298.50908 * 9 7 2 11 11 C 1.50802 * 108.80003 * 57.02513 * 9 7 2 12 12 C 1.54439 * 109.00654 * 213.83508 * 11 9 7 13 13 N 1.39777 * 111.69976 * 282.50311 * 12 11 9 14 14 C 1.47626 * 114.76654 * 62.31672 * 13 12 11 15 15 C 1.50815 * 108.03960 * 277.17474 * 14 13 12 16 16 C 1.53825 * 111.61719 * 95.06511 * 15 14 13 17 17 H 1.09002 * 108.97997 * 79.60602 * 16 15 14 18 18 O 1.42903 * 108.97697 * 198.40267 * 16 15 14 19 19 H 0.96999 * 119.99750 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.61458 * 93.94515 * 11 9 7 21 21 H 1.08995 * 109.50630 * 333.66237 * 11 9 7 22 22 H 1.09002 * 109.02505 * 161.95072 * 12 11 9 23 23 H 1.08999 * 109.01987 * 43.05221 * 12 11 9 24 24 H 1.00906 * 110.99731 * 189.16734 * 13 12 11 25 25 H 1.08995 * 109.75247 * 36.81182 * 14 13 12 26 26 H 1.09004 * 109.74850 * 157.49436 * 14 13 12 27 27 H 1.08997 * 109.05362 * 215.61083 * 15 14 13 28 28 H 1.08997 * 109.05431 * 334.51216 * 15 14 13 29 29 H 0.96697 * 114.00176 * 299.99438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0005 10 1 0.6489 -2.5578 0.9063 11 6 0.3345 -2.5313 -1.1978 12 6 -0.9514 -3.3019 -0.8265 13 7 -0.7436 -4.6841 -0.8256 14 6 0.2467 -5.1600 0.1604 15 6 1.6207 -4.9872 -0.4368 16 6 2.2652 -3.6602 -0.0011 17 1 2.6703 -3.7761 1.0042 18 8 3.3319 -3.3450 -0.8982 19 1 -0.4850 0.8401 0.0004 20 1 0.8334 -3.0328 -2.0271 21 1 0.0782 -1.5123 -1.4873 22 1 -1.7314 -3.0603 -1.5485 23 1 -1.2777 -2.9910 0.1660 24 1 -1.6166 -5.1810 -0.7300 25 1 0.1664 -4.5735 1.0755 26 1 0.0700 -6.2128 0.3811 27 1 2.2550 -5.8132 -0.1151 28 1 1.5409 -5.0040 -1.5238 29 1 4.0319 -4.0115 -0.9265 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233633.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:20 Heat of formation + Delta-G solvation = -75.674439 kcal Electronic energy + Delta-G solvation = -12137.171620 eV Core-core repulsion = 10058.933781 eV Total energy + Delta-G solvation = -2078.237840 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.09569 -37.06088 -35.36917 -32.48412 -32.18033 -27.94349 -25.65036 -24.57689 -21.66783 -20.19963 -18.72590 -17.93253 -17.28994 -16.51828 -15.81282 -15.47737 -14.92299 -14.33532 -14.00104 -13.70387 -13.13919 -12.82877 -12.74670 -12.59524 -12.30936 -12.08207 -11.64428 -11.62393 -10.81013 -10.75570 -10.44955 -10.23229 -9.19079 -8.04084 -6.14888 1.38407 1.40391 1.52577 2.45847 3.19735 3.46292 3.80673 4.05763 4.24447 4.43610 4.47811 4.54178 4.72845 4.84700 4.92663 5.02952 5.20064 5.30778 5.42589 5.68110 5.69252 5.90708 6.13196 6.42754 6.55055 6.78175 6.95095 7.24045 7.52230 8.99164 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.050628 B = 0.015202 C = 0.012450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.923506 B = 1841.368982 C = 2248.477910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.513 4.513 8 H 0.049 0.951 9 C 0.049 3.951 10 H -0.001 1.001 11 C -0.085 4.085 12 C 0.095 3.905 13 N -0.700 5.700 14 C 0.071 3.929 15 C -0.138 4.138 16 C 0.113 3.887 17 H 0.031 0.969 18 O -0.571 6.571 19 H 0.258 0.742 20 H 0.030 0.970 21 H 0.059 0.941 22 H 0.058 0.942 23 H -0.009 1.009 24 H 0.350 0.650 25 H 0.021 0.979 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -9.531 0.047 9.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.030 3.970 10 H 0.017 0.983 11 C -0.124 4.124 12 C -0.036 4.036 13 N -0.333 5.333 14 C -0.057 4.057 15 C -0.177 4.177 16 C 0.054 3.946 17 H 0.049 0.951 18 O -0.376 6.376 19 H 0.067 0.933 20 H 0.049 0.951 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.009 0.991 24 H 0.171 0.829 25 H 0.040 0.960 26 H 0.121 0.879 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.593 -8.804 -0.502 8.838 hybrid contribution 0.111 0.850 0.960 1.287 sum 0.704 -7.954 0.458 7.998 Atomic orbital electron populations 1.70078 1.06792 1.26661 1.52070 1.25703 0.95775 1.02138 0.95694 0.85602 0.78936 0.80137 0.77534 1.19793 1.20703 1.20538 1.21564 0.93151 0.91872 1.48602 0.93319 1.18604 0.92280 0.92249 0.93826 0.98331 1.21247 0.94399 0.99030 0.97701 1.20548 0.97868 0.87786 0.97398 1.57355 1.15421 1.06245 1.54276 1.21586 0.91789 1.00232 0.92108 1.22097 0.96827 0.96655 1.02080 1.22355 0.87700 0.94297 0.90257 0.95106 1.86746 1.34487 1.50164 1.66242 0.93320 0.95086 0.92279 0.92337 0.99078 0.82924 0.96029 0.87923 0.89679 0.91389 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.24 11.33 21.45 0.24 -54.00 15 2 C 0.00 0.24 5.03 84.66 0.43 0.67 15 3 Si 0.95 46.01 29.54 68.60 2.03 48.04 15 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 15 5 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 6 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 7 C -0.51 -30.06 8.04 25.60 0.21 -29.85 15 8 H 0.05 2.91 7.02 -2.91 -0.02 2.89 15 9 C 0.05 2.54 1.54 -11.86 -0.02 2.52 15 10 H 0.00 -0.07 6.58 -2.39 -0.02 -0.08 15 11 C -0.09 -4.32 4.73 30.37 0.14 -4.17 15 12 C 0.09 4.02 6.00 88.08 0.53 4.55 15 13 N -0.70 -23.72 6.07 -528.96 -3.21 -26.93 15 14 C 0.07 2.24 6.22 85.45 0.53 2.77 15 15 C -0.14 -4.58 5.01 30.16 0.15 -4.43 15 16 C 0.11 4.76 3.12 31.27 0.10 4.86 15 17 H 0.03 1.27 8.14 -2.39 -0.02 1.25 15 18 O -0.57 -24.17 11.88 -148.98 -1.77 -25.94 15 19 H 0.26 14.52 8.31 -92.71 -0.77 13.75 15 20 H 0.03 1.56 7.10 -2.38 -0.02 1.54 15 21 H 0.06 3.42 5.59 -2.39 -0.01 3.41 15 22 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 23 H -0.01 -0.41 7.54 -2.39 -0.02 -0.43 15 24 H 0.35 9.52 8.85 -89.69 -0.79 8.73 15 25 H 0.02 0.77 6.66 -2.39 -0.02 0.76 15 26 H 0.10 2.38 8.14 -2.39 -0.02 2.37 15 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 15 28 H 0.07 2.45 7.25 -2.39 -0.02 2.43 15 29 H 0.37 11.13 9.08 -74.06 -0.67 10.46 15 Total: -1.00 -66.74 226.38 -0.96 -67.70 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.31 Total: 14.23 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 2.07 Total: -23.09 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.97 Total: -80.92 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -1.77 Total: -25.94 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -66.74 -0.96 -67.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233633.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.979 kcal (2) G-P(sol) polarization free energy of solvation -66.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds