Wall clock time and date at job start Mon Mar 30 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09001 * 109.03697 * 58.69819 * 9 7 2 11 11 C 1.50816 * 109.04748 * 299.72234 * 9 7 2 12 12 N 1.47623 * 108.03808 * 144.39151 * 11 9 7 13 13 C 1.39783 * 114.77046 * 82.80761 * 12 11 9 14 14 C 1.54433 * 111.76781 * 297.72249 * 13 12 11 15 15 C 1.50760 * 109.02796 * 77.39152 * 14 13 12 16 16 C 1.53812 * 109.05016 * 177.60449 * 9 7 2 17 17 H 1.09001 * 108.98235 * 282.15440 * 16 9 7 18 18 O 1.42906 * 108.98190 * 40.86855 * 16 9 7 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09008 * 109.74367 * 264.02211 * 11 9 7 21 21 H 1.09000 * 109.75038 * 24.74994 * 11 9 7 22 22 H 1.00898 * 111.00508 * 209.66592 * 12 11 9 23 23 H 1.09000 * 109.01967 * 58.31111 * 13 12 11 24 24 H 1.08998 * 109.02613 * 177.20989 * 13 12 11 25 25 H 1.08997 * 109.54875 * 197.25605 * 14 13 12 26 26 H 1.08999 * 109.54351 * 317.52790 * 14 13 12 27 27 H 1.09000 * 108.85369 * 27.79760 * 15 14 13 28 28 H 1.08996 * 108.85072 * 146.28781 * 15 14 13 29 29 H 0.96695 * 114.00113 * 179.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6133 -2.5376 -0.8886 11 6 0.3874 -2.5745 1.2288 12 7 -0.8653 -3.2675 0.8686 13 6 -0.7857 -4.6630 0.8762 14 6 0.2321 -5.1842 -0.1618 15 6 1.6265 -4.9949 0.3792 16 6 2.2581 -3.6602 -0.0642 17 1 2.6220 -3.7625 -1.0865 18 8 3.3623 -3.3615 0.7923 19 1 -0.4850 0.8401 -0.0004 20 1 0.9064 -3.1331 2.0079 21 1 0.1631 -1.5685 1.5834 22 1 -1.6332 -2.9461 1.4388 23 1 -0.4830 -4.9962 1.8689 24 1 -1.7680 -5.0762 0.6472 25 1 0.0537 -6.2433 -0.3476 26 1 0.1228 -4.6261 -1.0917 27 1 1.5885 -5.0221 1.4682 28 1 2.2545 -5.8138 0.0285 29 1 4.0430 -4.0481 0.8106 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:06 Heat of formation + Delta-G solvation = -74.917611 kcal Electronic energy + Delta-G solvation = -12132.571094 eV Core-core repulsion = 10054.366073 eV Total energy + Delta-G solvation = -2078.205021 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.07188 -37.01024 -35.16153 -33.07426 -31.86393 -27.59233 -25.57262 -24.82537 -21.63297 -20.20071 -18.79142 -17.72101 -17.15013 -16.40410 -15.84929 -15.42319 -14.98978 -14.30528 -13.97557 -13.66521 -13.27828 -13.01250 -12.68423 -12.60192 -12.23169 -11.93780 -11.64387 -11.46885 -10.96364 -10.73132 -10.46726 -10.29005 -8.90138 -7.97608 -6.08864 1.42451 1.43253 1.54179 2.49658 3.24619 3.62803 3.79991 4.01794 4.11303 4.28622 4.49586 4.53212 4.68174 4.87686 5.03283 5.08938 5.14407 5.15727 5.45309 5.50889 5.62441 5.94310 6.08000 6.47298 6.72057 6.99242 7.02991 7.21955 7.57449 9.05435 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.050485 B = 0.015232 C = 0.012484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.484152 B = 1837.841359 C = 2242.319927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.048 0.952 9 C 0.054 3.946 10 H 0.017 0.983 11 C 0.110 3.890 12 N -0.708 5.708 13 C 0.081 3.919 14 C -0.113 4.113 15 C -0.141 4.141 16 C 0.111 3.889 17 H 0.030 0.970 18 O -0.571 6.571 19 H 0.256 0.744 20 H 0.001 0.999 21 H 0.056 0.944 22 H 0.337 0.663 23 H 0.005 0.995 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 -9.371 1.396 9.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.201 1.201 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.035 3.965 10 H 0.035 0.965 11 C -0.018 4.018 12 N -0.339 5.339 13 C -0.050 4.050 14 C -0.151 4.151 15 C -0.179 4.179 16 C 0.052 3.948 17 H 0.048 0.952 18 O -0.376 6.376 19 H 0.065 0.935 20 H 0.019 0.981 21 H 0.075 0.925 22 H 0.156 0.844 23 H 0.023 0.977 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.470 -8.704 0.869 8.760 hybrid contribution 0.675 0.489 0.754 1.124 sum 1.145 -8.215 1.623 8.452 Atomic orbital electron populations 1.70152 1.06532 1.26472 1.51209 1.25695 0.95746 1.01871 0.95685 0.85723 0.78683 0.80184 0.77980 1.20370 1.20874 1.20076 1.21460 0.93062 0.91763 1.49594 0.93326 1.18547 0.91590 0.91606 0.94713 0.96511 1.21380 0.88187 0.96164 0.96115 1.57150 1.07556 1.07010 1.62195 1.20859 0.99788 0.88132 0.96238 1.21426 0.93654 1.01244 0.98772 1.22091 0.97824 0.97019 1.00920 1.22394 0.87081 0.94434 0.90897 0.95156 1.86757 1.33557 1.48429 1.68893 0.93466 0.98095 0.92524 0.84372 0.97743 0.90278 0.88882 0.92816 0.92675 0.90281 0.78122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.32 11.63 21.45 0.25 -53.07 15 2 C 0.01 0.49 5.03 84.66 0.43 0.92 15 3 Si 0.95 45.71 29.54 68.60 2.03 47.74 15 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 15 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 6 H -0.28 -13.19 7.11 99.48 0.71 -12.49 15 7 C -0.52 -30.23 8.02 25.60 0.21 -30.03 15 8 H 0.05 2.89 6.96 -2.91 -0.02 2.87 15 9 C 0.05 2.83 1.55 -11.97 -0.02 2.81 15 10 H 0.02 0.98 7.26 -2.39 -0.02 0.96 15 11 C 0.11 5.41 5.31 85.45 0.45 5.86 15 12 N -0.71 -29.63 6.07 -528.95 -3.21 -32.84 15 13 C 0.08 2.70 5.99 88.07 0.53 3.23 15 14 C -0.11 -3.60 5.65 30.35 0.17 -3.43 15 15 C -0.14 -4.67 4.90 30.26 0.15 -4.52 15 16 C 0.11 4.69 3.14 31.26 0.10 4.79 15 17 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 18 O -0.57 -23.99 11.85 -148.98 -1.76 -25.75 15 19 H 0.26 14.45 8.31 -92.70 -0.77 13.68 15 20 H 0.00 0.05 6.66 -2.38 -0.02 0.03 15 21 H 0.06 3.19 5.98 -2.39 -0.01 3.17 15 22 H 0.34 13.14 8.85 -89.70 -0.79 12.35 15 23 H 0.00 0.15 7.54 -2.39 -0.02 0.14 15 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 26 H 0.05 1.98 7.11 -2.39 -0.02 1.96 15 27 H 0.05 1.90 6.57 -2.39 -0.02 1.88 15 28 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 29 H 0.37 11.05 9.05 -74.06 -0.67 10.38 15 Total: -1.00 -65.48 226.86 -1.00 -66.48 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -0.31 Total: 17.81 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: 2.01 Total: -20.37 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.96 Total: -85.92 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.76 Total: -25.75 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -65.48 -1.00 -66.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.435 kcal (2) G-P(sol) polarization free energy of solvation -65.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds