Wall clock time and date at job start Mon Mar 30 2020 02:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48499 * 109.47086 * 239.99755 * 3 2 1 5 5 H 1.48498 * 109.47005 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47050 * 119.99546 * 3 2 1 7 7 C 1.37880 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99980 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99759 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.61921 * 59.77374 * 9 7 2 11 11 C 1.54437 * 109.54737 * 299.54395 * 9 7 2 12 12 N 1.39775 * 111.76575 * 162.72739 * 11 9 7 13 13 C 1.47632 * 114.76127 * 62.28216 * 12 11 9 14 14 C 1.50816 * 108.05318 * 277.19169 * 13 12 11 15 15 C 1.53823 * 111.62048 * 95.05315 * 14 13 12 16 16 C 1.50748 * 109.54678 * 179.97438 * 9 7 2 17 17 H 1.08999 * 108.85407 * 92.17226 * 16 9 7 18 18 O 1.42903 * 108.85455 * 333.69121 * 16 9 7 19 19 H 0.96999 * 119.99971 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.01589 * 283.31775 * 11 9 7 21 21 H 1.08999 * 109.02226 * 42.13701 * 11 9 7 22 22 H 1.00904 * 110.99538 * 189.13121 * 12 11 9 23 23 H 1.09000 * 109.74436 * 36.83651 * 13 12 11 24 24 H 1.09001 * 109.74438 * 157.55512 * 13 12 11 25 25 H 1.08993 * 109.05049 * 215.60363 * 14 13 12 26 26 H 1.09001 * 109.04451 * 334.57621 * 14 13 12 27 27 H 1.09006 * 108.98043 * 198.40657 * 15 14 13 28 28 H 1.08991 * 108.98380 * 79.68480 * 15 14 13 29 29 H 0.96700 * 114.00311 * 179.97438 * 18 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6209 -2.5579 -0.8868 11 6 0.3708 -2.5875 1.2663 12 7 -0.6218 -3.5635 1.1402 13 6 -0.1171 -4.9402 0.9684 14 6 0.2159 -5.1374 -0.4893 15 6 1.7047 -4.8730 -0.7714 16 6 2.2292 -3.6462 0.0005 17 1 2.4280 -3.9396 1.0313 18 8 3.4513 -3.2111 -0.5988 19 1 -0.4850 0.8400 -0.0004 20 1 1.0016 -2.8306 2.1214 21 1 -0.1017 -1.6205 1.4387 22 1 -1.2787 -3.5120 1.9045 23 1 0.7785 -5.0822 1.5733 24 1 -0.8835 -5.6539 1.2708 25 1 -0.0236 -6.1620 -0.7735 26 1 -0.3855 -4.4526 -1.0873 27 1 1.8384 -4.7029 -1.8397 28 1 2.2822 -5.7498 -0.4785 29 1 4.1355 -3.8934 -0.6369 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233641.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:07 Heat of formation + Delta-G solvation = -50.967495 kcal Electronic energy + Delta-G solvation = -12109.119935 eV Core-core repulsion = 10031.953468 eV Total energy + Delta-G solvation = -2077.166466 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.43943 -35.36794 -33.08022 -31.70843 -29.82060 -25.93085 -23.61583 -23.23370 -19.95746 -18.62499 -16.90804 -15.72963 -15.35070 -14.52010 -14.08631 -13.94646 -13.60267 -12.63696 -12.40351 -11.85383 -11.48299 -11.03128 -10.95052 -10.61873 -10.44758 -10.27821 -9.97036 -9.74470 -9.13717 -8.96424 -8.65964 -8.21309 -7.32236 -5.83487 -3.86623 3.42199 3.45663 3.50118 4.56552 5.09707 5.21331 5.42471 5.52808 5.63775 5.68760 6.02410 6.12693 6.19511 6.29543 6.45799 6.63812 6.71531 6.86746 6.97247 7.21611 7.65861 7.98190 8.15395 8.32129 8.43142 8.58659 8.79352 9.22355 9.76627 11.22263 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.049535 B = 0.015176 C = 0.012486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.126792 B = 1844.596185 C = 2241.973068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.053 3.947 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.492 4.492 8 H 0.070 0.930 9 C 0.058 3.942 10 H 0.042 0.958 11 C 0.077 3.923 12 N -0.694 5.694 13 C 0.064 3.936 14 C -0.111 4.111 15 C -0.149 4.149 16 C 0.114 3.886 17 H 0.025 0.975 18 O -0.544 6.544 19 H 0.258 0.742 20 H -0.020 1.020 21 H 0.107 0.893 22 H 0.327 0.673 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.043 0.957 29 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 -8.503 1.640 8.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.147 4.147 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.531 4.531 8 H 0.088 0.912 9 C 0.039 3.961 10 H 0.060 0.940 11 C -0.053 4.053 12 N -0.325 5.325 13 C -0.064 4.064 14 C -0.149 4.149 15 C -0.187 4.187 16 C 0.056 3.944 17 H 0.043 0.957 18 O -0.346 6.346 19 H 0.068 0.932 20 H -0.002 1.002 21 H 0.125 0.875 22 H 0.145 0.855 23 H 0.046 0.954 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.417 -7.700 0.939 7.769 hybrid contribution 1.048 0.107 0.950 1.419 sum 1.466 -7.593 1.889 7.960 Atomic orbital electron populations 1.69927 1.05666 1.26150 1.51412 1.25033 0.94852 0.98985 0.95791 0.86674 0.79524 0.83328 0.78499 1.20404 1.21561 1.20550 1.21119 0.93807 0.89550 1.48614 0.91199 1.18585 0.91239 0.91435 0.94829 0.93962 1.21098 0.92280 0.95533 0.96433 1.57430 1.21414 1.03557 1.50071 1.21615 0.97689 0.90687 0.96451 1.21309 0.96010 1.00201 0.97391 1.22684 0.96606 0.98074 1.01333 1.21968 0.85703 0.94255 0.92487 0.95679 1.86958 1.23941 1.39689 1.83980 0.93238 1.00207 0.87509 0.85489 0.95362 0.92412 0.93213 0.90203 0.91884 0.93860 0.81400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 11.40 55.43 0.63 -25.56 15 2 C 0.05 1.53 5.20 -17.82 -0.09 1.44 15 3 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 15 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 15 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 15 7 C -0.49 -14.23 8.08 -34.44 -0.28 -14.51 15 8 H 0.07 2.06 6.44 -52.49 -0.34 1.73 15 9 C 0.06 1.51 1.77 -92.15 -0.16 1.35 15 10 H 0.04 1.22 7.10 -51.93 -0.37 0.85 15 11 C 0.08 1.86 5.23 -6.74 -0.04 1.82 15 12 N -0.69 -14.17 6.07 -118.54 -0.72 -14.89 15 13 C 0.06 1.11 6.22 -4.52 -0.03 1.09 15 14 C -0.11 -1.93 5.41 -27.40 -0.15 -2.08 15 15 C -0.15 -2.70 5.49 -25.71 -0.14 -2.84 15 16 C 0.11 2.51 2.76 -27.26 -0.08 2.44 15 17 H 0.03 0.55 6.57 -51.93 -0.34 0.21 15 18 O -0.54 -11.96 11.18 -35.23 -0.39 -12.36 15 19 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 20 H -0.02 -0.48 7.55 -51.93 -0.39 -0.87 15 21 H 0.11 2.91 5.86 -51.93 -0.30 2.61 15 22 H 0.33 5.90 8.85 -39.29 -0.35 5.55 15 23 H 0.03 0.50 6.66 -51.93 -0.35 0.15 15 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.08 1.59 7.26 -51.93 -0.38 1.21 15 27 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 29 H 0.34 5.56 9.04 45.56 0.41 5.97 15 LS Contribution 225.88 15.07 3.40 3.40 Total: -1.00 -30.92 225.88 -6.29 -37.21 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -3.23 Total: 6.27 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -0.96 Total: -11.30 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: -0.09 Total: -40.45 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.39 Total: -12.36 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -30.92 -6.29 -37.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233641.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.753 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds