Wall clock time and date at job start Mon Mar 30 2020 02:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86800 * 120.00102 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99871 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00477 * 3 2 1 7 7 C 1.38637 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00309 * 180.02562 * 7 2 1 9 9 O 1.34924 * 119.99722 * 359.97438 * 7 2 1 10 10 C 1.42893 * 117.00075 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.01920 * 330.70091 * 10 9 7 12 12 C 1.54275 * 110.03245 * 92.09351 * 10 9 7 13 13 C 1.54892 * 104.19578 * 142.89734 * 12 10 9 14 14 C 1.54885 * 102.74807 * 322.05334 * 13 12 10 15 15 C 1.53875 * 110.03644 * 209.30578 * 10 9 7 16 16 H 1.09001 * 110.02980 * 121.42944 * 15 10 9 17 17 C 1.53006 * 110.02905 * 0.02562 * 15 10 9 18 18 N 1.46900 * 109.46755 * 174.99619 * 17 15 10 19 19 H 0.97000 * 119.99571 * 179.97438 * 1 2 3 20 20 H 1.09011 * 110.48253 * 261.57274 * 12 10 9 21 21 H 1.08994 * 110.48790 * 24.21118 * 12 10 9 22 22 H 1.08993 * 110.75387 * 80.37396 * 13 12 10 23 23 H 1.08998 * 110.74917 * 203.55756 * 13 12 10 24 24 H 1.08997 * 110.48825 * 156.61911 * 14 13 12 25 25 H 1.09001 * 110.48707 * 279.13859 * 14 13 12 26 26 H 1.08993 * 109.47051 * 295.00046 * 17 15 10 27 27 H 1.09004 * 109.46755 * 54.99720 * 17 15 10 28 28 H 1.00907 * 110.99666 * 180.02562 * 18 17 15 29 29 H 1.00898 * 111.00201 * 303.95363 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 1.2848 2.7464 0.0006 5 1 3.1036 1.6964 1.2125 6 1 3.1035 1.6965 -1.2125 7 6 2.0091 -1.2006 -0.0005 8 1 3.0891 -1.2006 -0.0001 9 8 1.3345 -2.3691 -0.0005 10 6 2.1127 -3.5675 -0.0005 11 1 3.0650 -3.3940 -0.5017 12 6 2.3561 -4.0395 1.4479 13 6 2.2823 -5.5843 1.3615 14 6 1.1441 -5.8152 0.3367 15 6 1.3426 -4.6962 -0.7081 16 1 1.9215 -5.0710 -1.5522 17 6 -0.0151 -4.1817 -1.1907 18 7 -0.6886 -5.2313 -1.9672 19 1 -0.4849 -0.8401 -0.0004 20 1 3.3411 -3.7233 1.7917 21 1 1.5792 -3.6568 2.1095 22 1 3.2223 -5.9959 0.9942 23 1 2.0266 -6.0134 2.3302 24 1 1.2444 -6.7948 -0.1306 25 1 0.1713 -5.7215 0.8193 26 1 -0.6293 -3.9153 -0.3306 27 1 0.1317 -3.3028 -1.8186 28 1 -1.5881 -4.9156 -2.2978 29 1 -0.1104 -5.5413 -2.7337 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084240394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:57 Heat of formation + Delta-G solvation = -58.336805 kcal Electronic energy + Delta-G solvation = -11786.042144 eV Core-core repulsion = 9708.556121 eV Total energy + Delta-G solvation = -2077.486023 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.41239 -35.18489 -33.52340 -31.43292 -28.28710 -26.99866 -23.81721 -22.86795 -20.21934 -19.02610 -17.84506 -15.81437 -15.29898 -14.35566 -14.14611 -13.90172 -13.62713 -13.20262 -12.91578 -12.33494 -11.52570 -11.00486 -10.73239 -10.52833 -10.39326 -10.37195 -10.15884 -10.07639 -9.77040 -9.42625 -9.05759 -8.23353 -7.90814 -6.25193 -3.55410 3.41253 3.45733 3.63422 4.46510 4.93252 5.15273 5.17802 5.38187 5.50873 5.69934 5.77730 6.03294 6.09184 6.12328 6.16312 6.32400 6.46879 6.52578 6.56294 6.78120 6.83831 6.93397 7.01152 7.53867 7.73874 7.80137 8.88415 9.49195 10.14687 11.22591 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.048283 B = 0.012379 C = 0.010492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.774949 B = 2261.264459 C = 2667.979554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 1.088 2.912 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.445 4.445 8 H 0.050 0.950 9 O -0.304 6.304 10 C 0.104 3.896 11 H 0.040 0.960 12 C -0.142 4.142 13 C -0.127 4.127 14 C -0.101 4.101 15 C -0.085 4.085 16 H 0.062 0.938 17 C 0.082 3.918 18 N -0.855 5.855 19 H 0.274 0.726 20 H 0.054 0.946 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.335 0.665 29 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.951 -8.651 -1.129 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.916 3.084 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.524 4.524 8 H 0.068 0.932 9 O -0.220 6.220 10 C 0.044 3.956 11 H 0.058 0.942 12 C -0.180 4.180 13 C -0.165 4.165 14 C -0.139 4.139 15 C -0.104 4.104 16 H 0.080 0.920 17 C -0.048 4.048 18 N -0.384 5.384 19 H 0.084 0.916 20 H 0.073 0.927 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.147 0.853 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.595 -7.408 -0.442 7.862 hybrid contribution 0.713 -1.042 -0.766 1.477 sum 3.308 -8.450 -1.209 9.154 Atomic orbital electron populations 1.70580 1.06180 1.30592 1.48182 1.25977 0.97122 1.00263 0.97525 0.83201 0.74271 0.74718 0.76255 1.20387 1.21647 1.21706 1.21742 0.91106 0.84343 1.55210 0.93217 1.85395 1.32531 1.10897 1.93157 1.22333 0.93251 0.86830 0.93159 0.94237 1.22913 1.01283 0.94304 0.99476 1.22468 0.98500 0.96677 0.98855 1.22239 0.98463 0.97367 0.95786 1.21859 0.96203 0.95044 0.97331 0.92002 1.21536 0.94165 0.91256 0.97812 1.58898 1.07569 1.42328 1.29562 0.91623 0.92670 0.91014 0.92339 0.92255 0.92416 0.91503 0.90668 0.94341 0.85348 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.09 13.70 55.48 0.76 -28.33 15 2 C -0.01 -0.27 5.49 -17.51 -0.10 -0.37 15 3 Si 1.09 25.81 29.92 -169.99 -5.09 20.72 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.52 7.11 56.52 0.40 -6.11 15 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 15 7 C -0.44 -13.15 9.81 30.88 0.30 -12.85 15 8 H 0.05 1.43 7.65 -52.49 -0.40 1.03 15 9 O -0.30 -8.42 6.94 -16.49 -0.11 -8.54 15 10 C 0.10 2.32 3.40 -25.61 -0.09 2.24 15 11 H 0.04 0.89 7.82 -51.93 -0.41 0.49 15 12 C -0.14 -2.80 6.56 -25.07 -0.16 -2.96 15 13 C -0.13 -2.03 6.91 -24.74 -0.17 -2.20 15 14 C -0.10 -1.66 6.19 -25.02 -0.15 -1.82 15 15 C -0.09 -1.60 3.09 -89.44 -0.28 -1.87 15 16 H 0.06 1.08 8.14 -51.93 -0.42 0.65 15 17 C 0.08 1.61 5.12 -3.82 -0.02 1.59 15 18 N -0.86 -13.27 9.45 -10.37 -0.10 -13.37 15 19 H 0.27 8.86 7.97 -40.82 -0.33 8.54 15 20 H 0.05 1.05 8.14 -51.92 -0.42 0.63 15 21 H 0.07 1.54 8.08 -51.93 -0.42 1.12 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.07 1.16 7.77 -51.93 -0.40 0.75 15 26 H 0.07 1.63 7.91 -51.93 -0.41 1.22 15 27 H 0.04 0.86 7.65 -51.93 -0.40 0.47 15 28 H 0.34 4.71 9.08 -39.29 -0.36 4.36 15 29 H 0.33 4.55 8.99 -39.29 -0.35 4.19 15 LS Contribution 241.52 15.07 3.64 3.64 Total: -1.00 -31.85 241.52 -5.95 -37.80 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.38 Total: 6.32 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.67 Total: -18.24 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.66 Total: -41.69 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.11 Total: -8.54 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.09 Total: 20.72 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.85 -5.95 -37.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084240394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.540 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds