Wall clock time and date at job start Mon Mar 30 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00459 * 2 1 4 4 H 1.48495 * 109.46985 * 269.99964 * 3 2 1 5 5 H 1.48501 * 109.47143 * 29.99486 * 3 2 1 6 6 H 1.48495 * 109.47755 * 149.99327 * 3 2 1 7 7 C 1.37884 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00040 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99859 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47288 * 180.02562 * 9 7 2 11 11 O 1.42891 * 109.47175 * 180.02562 * 10 9 7 12 12 C 1.42905 * 113.99873 * 179.97438 * 11 10 9 13 13 C 1.53786 * 113.61467 * 110.86351 * 12 11 10 14 14 C 1.53962 * 87.01719 * 89.22967 * 13 12 11 15 15 N 1.46897 * 113.66226 * 139.93465 * 14 13 12 16 16 C 1.53781 * 113.61505 * 208.47211 * 12 11 10 17 17 H 0.96999 * 119.99734 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46935 * 60.00093 * 9 7 2 19 19 H 1.08994 * 109.47002 * 300.00743 * 9 7 2 20 20 H 1.08999 * 109.46770 * 59.99809 * 10 9 7 21 21 H 1.09002 * 109.47149 * 300.00700 * 10 9 7 22 22 H 1.09002 * 112.84917 * 339.66862 * 12 11 10 23 23 H 1.08993 * 113.61491 * 203.75088 * 13 12 11 24 24 H 1.09000 * 113.61138 * 334.65426 * 13 12 11 25 25 H 1.09002 * 113.61454 * 270.79954 * 14 13 12 26 26 H 1.00900 * 111.00026 * 82.44380 * 15 14 13 27 27 H 1.00908 * 110.99751 * 206.39262 * 15 14 13 28 28 H 1.09001 * 113.61695 * 25.34840 * 16 12 11 29 29 H 1.08997 * 113.61223 * 156.25423 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 8 5.4504 -2.6367 0.0021 12 6 6.0316 -3.9422 0.0027 13 6 6.7417 -4.3010 -1.3134 14 6 8.0117 -3.6795 -0.7040 15 7 9.2378 -4.4311 -1.0033 16 6 7.4131 -4.0012 0.6756 17 1 -0.4850 0.8401 -0.0004 18 1 3.8745 -0.6802 0.8912 19 1 3.8752 -0.6805 -0.8887 20 1 3.6585 -3.1503 -0.8892 21 1 3.6577 -3.1508 0.8907 22 1 5.3430 -4.7119 0.3512 23 1 6.8212 -5.3739 -1.4881 24 1 6.3600 -3.7575 -2.1776 25 1 8.1117 -2.6116 -0.8984 26 1 9.5960 -4.1903 -1.9153 27 1 9.9360 -4.2829 -0.2900 28 1 7.5728 -3.2161 1.4146 29 1 7.6766 -4.9921 1.0455 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:22 Heat of formation + Delta-G solvation = -35.570020 kcal Electronic energy + Delta-G solvation = -11114.526495 eV Core-core repulsion = 9038.027714 eV Total energy + Delta-G solvation = -2076.498782 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.26096 -36.06968 -33.12213 -31.63093 -30.07596 -25.63524 -24.72517 -23.12989 -20.60323 -19.23743 -16.97628 -16.20391 -15.73562 -15.29598 -14.74234 -14.64594 -14.11605 -13.13119 -12.53611 -12.31748 -12.13042 -11.78255 -11.28234 -11.09891 -10.52955 -10.30415 -10.13127 -9.94831 -9.81774 -9.26558 -8.93086 -8.78923 -8.56110 -6.08206 -4.07716 3.31555 3.38401 3.44888 4.07367 4.43867 4.51329 4.64122 4.88173 4.98726 5.26307 5.30640 5.55075 5.82063 5.89204 6.07915 6.14847 6.18174 6.20215 6.35037 6.66796 7.07264 7.14342 7.30097 7.36803 7.68692 7.92434 8.46818 8.94088 9.53196 11.04725 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.080123 B = 0.007565 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.377173 B = 3700.557530 C = 3882.842239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.073 0.927 9 C -0.009 4.009 10 C 0.076 3.924 11 O -0.376 6.376 12 C 0.066 3.934 13 C -0.149 4.149 14 C 0.063 3.937 15 N -0.842 5.842 16 C -0.135 4.135 17 H 0.264 0.736 18 H 0.024 0.976 19 H 0.019 0.981 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.338 0.662 27 H 0.338 0.662 28 H 0.072 0.928 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.104 -6.550 -0.677 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.047 4.047 10 C 0.000 4.000 11 O -0.295 6.295 12 C 0.006 3.994 13 C -0.187 4.187 14 C -0.048 4.048 15 N -0.372 5.372 16 C -0.173 4.173 17 H 0.074 0.926 18 H 0.042 0.958 19 H 0.038 0.962 20 H 0.060 0.940 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.091 0.909 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.576 -6.900 -0.611 16.138 hybrid contribution 0.623 1.612 -0.114 1.732 sum 15.199 -5.288 -0.724 16.109 Atomic orbital electron populations 1.69905 1.06284 1.27074 1.50708 1.24962 0.94754 0.99214 0.94284 0.86739 0.80433 0.83299 0.78663 1.20168 1.21289 1.18809 1.20940 0.88787 0.94779 1.51685 0.90890 1.19542 0.96611 0.91128 0.97406 1.22714 0.77322 1.00756 0.99177 1.87871 1.22217 1.24965 1.94443 1.22764 0.93834 0.86808 0.95982 1.23563 0.95452 1.01358 0.98333 1.22814 0.89459 0.95492 0.97068 1.58926 1.08283 1.62801 1.07149 1.23281 0.95261 1.02412 0.96314 0.92576 0.95781 0.96247 0.93951 0.93892 0.90995 0.89041 0.91099 0.91666 0.85001 0.84935 0.90880 0.88768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.93 13.96 55.43 0.77 -27.16 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 15 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 15 7 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 15 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 15 9 C -0.01 -0.24 4.41 -27.88 -0.12 -0.36 15 10 C 0.08 1.62 5.72 37.16 0.21 1.84 15 11 O -0.38 -7.33 10.27 -35.23 -0.36 -7.69 15 12 C 0.07 1.00 4.36 -25.92 -0.11 0.89 15 13 C -0.15 -2.02 7.73 -25.82 -0.20 -2.22 15 14 C 0.06 0.79 4.90 -66.81 -0.33 0.46 15 15 N -0.84 -8.54 9.58 -3.90 -0.04 -8.58 15 16 C -0.13 -1.73 7.70 -25.92 -0.20 -1.93 15 17 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 18 H 0.02 0.61 7.20 -51.93 -0.37 0.24 15 19 H 0.02 0.49 7.57 -51.93 -0.39 0.09 15 20 H 0.04 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.04 0.89 8.14 -51.93 -0.42 0.47 15 22 H 0.07 1.04 7.88 -51.93 -0.41 0.63 15 23 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.34 2.96 9.08 -39.29 -0.36 2.61 15 27 H 0.34 2.89 9.07 -39.29 -0.36 2.53 15 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 246.07 15.07 3.71 3.71 Total: -1.00 -30.99 246.07 -6.20 -37.19 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -4.43 Total: 0.03 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.18 Total: -14.93 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.74 Total: -35.74 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.36 Total: -7.69 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.99 -6.20 -37.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.622 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds