Wall clock time and date at job start Mon Mar 30 2020 02:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00459 * 2 1 4 4 H 1.48495 * 109.46985 * 269.99964 * 3 2 1 5 5 H 1.48501 * 109.47143 * 29.99486 * 3 2 1 6 6 H 1.48495 * 109.47755 * 149.99327 * 3 2 1 7 7 C 1.37884 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00040 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99859 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47288 * 180.02562 * 9 7 2 11 11 O 1.42891 * 109.47175 * 180.02562 * 10 9 7 12 12 C 1.42905 * 113.99873 * 179.97438 * 11 10 9 13 13 C 1.53786 * 113.61467 * 110.86351 * 12 11 10 14 14 C 1.53962 * 87.01719 * 89.22967 * 13 12 11 15 15 N 1.46897 * 113.66226 * 139.93465 * 14 13 12 16 16 C 1.53781 * 113.61505 * 208.47211 * 12 11 10 17 17 H 0.96999 * 119.99734 * 0.02562 * 1 2 3 18 18 H 1.09001 * 109.46935 * 60.00093 * 9 7 2 19 19 H 1.08994 * 109.47002 * 300.00743 * 9 7 2 20 20 H 1.08999 * 109.46770 * 59.99809 * 10 9 7 21 21 H 1.09002 * 109.47149 * 300.00700 * 10 9 7 22 22 H 1.09002 * 112.84917 * 339.66862 * 12 11 10 23 23 H 1.08993 * 113.61491 * 203.75088 * 13 12 11 24 24 H 1.09000 * 113.61138 * 334.65426 * 13 12 11 25 25 H 1.09002 * 113.61454 * 270.79954 * 14 13 12 26 26 H 1.00900 * 111.00026 * 82.44380 * 15 14 13 27 27 H 1.00908 * 110.99751 * 206.39262 * 15 14 13 28 28 H 1.09001 * 113.61695 * 25.34840 * 16 12 11 29 29 H 1.08997 * 113.61223 * 156.25423 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 8 5.4504 -2.6367 0.0021 12 6 6.0316 -3.9422 0.0027 13 6 6.7417 -4.3010 -1.3134 14 6 8.0117 -3.6795 -0.7040 15 7 9.2378 -4.4311 -1.0033 16 6 7.4131 -4.0012 0.6756 17 1 -0.4850 0.8401 -0.0004 18 1 3.8745 -0.6802 0.8912 19 1 3.8752 -0.6805 -0.8887 20 1 3.6585 -3.1503 -0.8892 21 1 3.6577 -3.1508 0.8907 22 1 5.3430 -4.7119 0.3512 23 1 6.8212 -5.3739 -1.4881 24 1 6.3600 -3.7575 -2.1776 25 1 8.1117 -2.6116 -0.8984 26 1 9.5960 -4.1903 -1.9153 27 1 9.9360 -4.2829 -0.2900 28 1 7.5728 -3.2161 1.4146 29 1 7.6766 -4.9921 1.0455 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451093.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:22 Heat of formation + Delta-G solvation = -58.538581 kcal Electronic energy + Delta-G solvation = -11115.522487 eV Core-core repulsion = 9038.027714 eV Total energy + Delta-G solvation = -2077.494773 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.45023 -37.49250 -35.20784 -32.90255 -31.82630 -26.82414 -26.57196 -24.25651 -22.58428 -20.41184 -19.02523 -17.51292 -16.77084 -16.61468 -16.19211 -16.10625 -15.88557 -14.88369 -14.31581 -13.92196 -13.25148 -13.10086 -12.91749 -12.84125 -12.13959 -11.93266 -11.75158 -11.51403 -11.39980 -11.33509 -10.82238 -10.35094 -9.67015 -8.34640 -6.40672 1.35200 1.36684 1.50041 2.33548 2.69985 3.00378 3.60757 3.65509 3.75961 3.88017 4.24219 4.32090 4.38666 4.52305 4.80522 4.83159 4.85774 5.03618 5.04698 5.24549 5.27637 5.38822 5.55709 6.17720 6.24550 6.41593 6.60678 6.65530 7.24577 8.81503 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.080123 B = 0.007565 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.377173 B = 3700.557530 C = 3882.842239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.952 3.048 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.252 1.252 7 C -0.537 4.537 8 H 0.039 0.961 9 C -0.007 4.007 10 C 0.088 3.912 11 O -0.389 6.389 12 C 0.045 3.955 13 C -0.144 4.144 14 C 0.069 3.931 15 N -0.839 5.839 16 C -0.123 4.123 17 H 0.270 0.730 18 H 0.023 0.977 19 H 0.021 0.979 20 H 0.042 0.958 21 H 0.045 0.955 22 H 0.079 0.921 23 H 0.106 0.894 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.347 0.653 27 H 0.350 0.650 28 H 0.069 0.931 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.204 -6.406 -0.644 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.575 4.575 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.012 3.988 11 O -0.309 6.309 12 C -0.014 4.014 13 C -0.183 4.183 14 C -0.043 4.043 15 N -0.370 5.370 16 C -0.161 4.161 17 H 0.079 0.921 18 H 0.042 0.958 19 H 0.039 0.961 20 H 0.061 0.939 21 H 0.063 0.937 22 H 0.097 0.903 23 H 0.124 0.876 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.088 0.912 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.703 -6.776 -0.580 18.035 hybrid contribution -0.034 1.453 -0.132 1.459 sum 16.669 -5.323 -0.712 17.513 Atomic orbital electron populations 1.70038 1.08137 1.28462 1.51860 1.25929 0.95650 1.03417 0.93717 0.85633 0.79339 0.78187 0.79365 1.18982 1.20395 1.17541 1.21220 0.90990 0.93729 1.51586 0.94283 1.19420 0.94028 0.93726 0.97240 1.22347 0.78825 0.98280 0.99320 1.87813 1.20599 1.27725 1.94731 1.23126 0.95022 0.85171 0.98053 1.23546 0.95642 1.02131 0.96939 1.22640 0.90202 0.94904 0.96549 1.58865 1.07950 1.62008 1.08166 1.23259 0.93138 1.03424 0.96292 0.92146 0.95831 0.96055 0.93949 0.93700 0.90278 0.87595 0.92312 0.93003 0.83963 0.83649 0.91222 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.13 15 2 C 0.01 0.63 5.47 84.66 0.46 1.09 15 3 Si 0.95 45.09 27.47 68.60 1.88 46.97 15 4 H -0.26 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.25 -11.35 6.54 99.48 0.65 -10.70 15 7 C -0.54 -31.68 9.66 25.60 0.25 -31.43 15 8 H 0.04 2.49 7.99 -2.91 -0.02 2.46 15 9 C -0.01 -0.33 4.41 29.85 0.13 -0.20 15 10 C 0.09 3.74 5.72 71.98 0.41 4.16 15 11 O -0.39 -14.75 10.27 -148.98 -1.53 -16.28 15 12 C 0.04 1.30 4.36 31.12 0.14 1.44 15 13 C -0.14 -3.66 7.73 31.18 0.24 -3.42 15 14 C 0.07 1.57 4.90 45.50 0.22 1.79 15 15 N -0.84 -14.65 9.58 -166.24 -1.59 -16.24 15 16 C -0.12 -2.88 7.70 31.12 0.24 -2.64 15 17 H 0.27 15.70 8.31 -92.71 -0.77 14.93 15 18 H 0.02 1.16 7.20 -2.39 -0.02 1.15 15 19 H 0.02 1.04 7.57 -2.39 -0.02 1.02 15 20 H 0.04 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.04 1.86 8.14 -2.39 -0.02 1.84 15 22 H 0.08 2.16 7.88 -2.39 -0.02 2.15 15 23 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 15 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 15 26 H 0.35 5.17 9.08 -89.69 -0.81 4.35 15 27 H 0.35 4.92 9.07 -89.69 -0.81 4.11 15 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 15 Total: -1.00 -65.62 246.07 0.61 -65.02 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -0.55 Total: 8.87 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 2.09 Total: -29.21 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.29 Total: -75.37 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -1.53 Total: -16.28 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.88 Total: 46.97 kcal Total: -65.62 0.61 -65.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451093.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.477 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds