Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47484 * 110.99773 * 74.03393 * 11 10 9 13 13 C 1.53516 * 87.93162 * 138.70049 * 12 11 10 14 14 C 1.52999 * 114.17147 * 220.32406 * 13 12 11 15 15 O 1.42898 * 109.47211 * 268.84381 * 14 13 12 16 16 C 1.47482 * 110.99764 * 169.99993 * 11 10 9 17 17 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 1.09002 * 113.46980 * 253.46672 * 12 11 10 23 23 H 1.08997 * 113.47937 * 23.93233 * 12 11 10 24 24 H 1.09000 * 114.34380 * 87.63201 * 13 12 11 25 25 H 1.09011 * 109.46740 * 28.84227 * 14 13 12 26 26 H 1.08998 * 109.46933 * 148.83709 * 14 13 12 27 27 H 0.96705 * 113.99697 * 179.97438 * 15 14 13 28 28 H 1.08999 * 113.47954 * 336.06479 * 16 11 10 29 29 H 1.09004 * 113.47420 * 106.52893 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6366 -0.0009 12 6 6.0189 -2.2577 1.3228 13 6 7.0751 -3.3591 1.1547 14 6 7.3575 -4.1562 2.4297 15 8 8.4306 -3.5430 3.1469 16 6 6.0189 -3.9925 0.2383 17 1 -0.4850 0.8401 0.0004 18 1 3.8751 -0.6805 0.8889 19 1 3.8745 -0.6801 -0.8910 20 1 3.6584 -3.1503 0.8892 21 1 3.6578 -3.1506 -0.8908 22 1 6.4401 -1.2528 1.3508 23 1 5.3214 -2.4460 2.1390 24 1 7.9799 -3.0388 0.6381 25 1 6.4643 -4.1706 3.0545 26 1 7.6331 -5.1773 2.1662 27 1 8.6641 -3.9962 3.9687 28 1 5.3215 -4.6438 0.7650 29 1 6.4401 -4.4579 -0.6529 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084988672.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = -22.929647 kcal Electronic energy + Delta-G solvation = -11230.305675 eV Core-core repulsion = 9154.355021 eV Total energy + Delta-G solvation = -2075.950654 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.95568 -36.60703 -33.51860 -31.56182 -28.85934 -25.76732 -25.43829 -22.49676 -20.04029 -19.58748 -17.38452 -16.83672 -15.69952 -15.12218 -14.82740 -14.23433 -13.58215 -13.33142 -12.79320 -12.52297 -12.23884 -11.48670 -11.34079 -10.92998 -10.80464 -10.52143 -10.06630 -9.96307 -9.72840 -9.61048 -9.21819 -8.53735 -8.43488 -6.04185 -4.02575 3.34068 3.40636 3.46656 4.01787 4.38957 4.47302 4.60484 5.08239 5.30498 5.32565 5.35256 5.47915 5.64024 5.66304 5.80850 5.91778 6.11331 6.13971 6.39299 6.67426 6.87692 7.16678 7.40405 7.50673 7.59786 7.82997 8.52772 8.99258 9.58464 11.09114 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064655 B = 0.008412 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.964761 B = 3327.869828 C = 3514.660278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.007 4.007 10 C 0.036 3.964 11 N -0.476 5.476 12 C 0.010 3.990 13 C -0.119 4.119 14 C 0.086 3.914 15 O -0.572 6.572 16 C 0.005 3.995 17 H 0.263 0.737 18 H 0.015 0.985 19 H 0.020 0.980 20 H 0.034 0.966 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.376 0.624 28 H 0.066 0.934 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.813 -7.669 4.724 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.092 4.092 11 N -0.198 5.198 12 C -0.119 4.119 13 C -0.138 4.138 14 C 0.008 3.992 15 O -0.377 6.377 16 C -0.125 4.125 17 H 0.073 0.927 18 H 0.033 0.967 19 H 0.038 0.962 20 H 0.052 0.948 21 H 0.088 0.912 22 H 0.099 0.901 23 H 0.087 0.913 24 H 0.124 0.876 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.222 0.778 28 H 0.084 0.916 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.756 -6.749 3.589 15.737 hybrid contribution -0.148 0.033 1.138 1.148 sum 13.608 -6.715 4.727 15.894 Atomic orbital electron populations 1.69916 1.06311 1.26934 1.51135 1.24998 0.94727 0.99210 0.94418 0.86744 0.80324 0.83404 0.78648 1.20179 1.21423 1.18972 1.21085 0.89374 0.94518 1.51099 0.91131 1.19495 0.96596 0.91512 0.96825 1.22654 0.85469 1.00812 1.00254 1.68961 1.11941 1.11543 1.27336 1.23796 0.95796 0.99800 0.92556 1.22779 0.98422 0.97523 0.95102 1.22205 0.89135 0.95239 0.92649 1.86515 1.54399 1.57072 1.39732 1.23763 0.96204 0.93793 0.98712 0.92715 0.96712 0.96176 0.94773 0.91215 0.90062 0.91297 0.87647 0.93449 0.93520 0.77771 0.91572 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 15 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 15 6 H -0.27 -6.56 6.54 56.52 0.37 -6.19 15 7 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 15 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 15 9 C -0.01 -0.16 4.15 -27.88 -0.12 -0.28 15 10 C 0.04 0.75 4.76 -3.82 -0.02 0.73 15 11 N -0.48 -8.67 6.41 -244.62 -1.57 -10.24 15 12 C 0.01 0.16 6.57 -7.54 -0.05 0.11 15 13 C -0.12 -1.60 4.34 -90.09 -0.39 -1.99 15 14 C 0.09 0.94 6.96 37.16 0.26 1.20 15 15 O -0.57 -6.43 13.66 -35.23 -0.48 -6.92 15 16 C 0.00 0.06 7.29 -7.55 -0.05 0.01 15 17 H 0.26 7.70 8.31 -40.82 -0.34 7.36 15 18 H 0.01 0.37 6.72 -51.93 -0.35 0.02 15 19 H 0.02 0.51 7.57 -51.93 -0.39 0.12 15 20 H 0.03 0.70 7.56 -51.93 -0.39 0.31 15 21 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 22 H 0.08 1.38 8.14 -51.93 -0.42 0.96 15 23 H 0.07 1.14 7.43 -51.93 -0.39 0.75 15 24 H 0.11 1.44 8.14 -51.93 -0.42 1.02 15 25 H 0.05 0.50 7.81 -51.92 -0.41 0.10 15 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 15 27 H 0.38 2.34 9.12 45.56 0.42 2.76 15 28 H 0.07 0.88 7.73 -51.93 -0.40 0.48 15 29 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 LS Contribution 242.41 15.07 3.65 3.65 Total: -1.00 -32.66 242.41 -6.71 -39.37 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.61 Total: -2.17 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.80 Total: -13.91 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.80 Total: -37.77 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -0.48 Total: -6.92 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.66 -6.71 -39.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084988672.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.437 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds