Wall clock time and date at job start Mon Mar 30 2020 02:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.47484 * 110.99773 * 74.03393 * 11 10 9 13 13 C 1.53516 * 87.93162 * 138.70049 * 12 11 10 14 14 C 1.52999 * 114.17147 * 220.32406 * 13 12 11 15 15 O 1.42898 * 109.47211 * 268.84381 * 14 13 12 16 16 C 1.47482 * 110.99764 * 169.99993 * 11 10 9 17 17 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 19 19 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 20 20 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 21 21 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 22 22 H 1.09002 * 113.46980 * 253.46672 * 12 11 10 23 23 H 1.08997 * 113.47937 * 23.93233 * 12 11 10 24 24 H 1.09000 * 114.34380 * 87.63201 * 13 12 11 25 25 H 1.09011 * 109.46740 * 28.84227 * 14 13 12 26 26 H 1.08998 * 109.46933 * 148.83709 * 14 13 12 27 27 H 0.96705 * 113.99697 * 179.97438 * 15 14 13 28 28 H 1.08999 * 113.47954 * 336.06479 * 16 11 10 29 29 H 1.09004 * 113.47420 * 106.52893 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6366 -0.0009 12 6 6.0189 -2.2577 1.3228 13 6 7.0751 -3.3591 1.1547 14 6 7.3575 -4.1562 2.4297 15 8 8.4306 -3.5430 3.1469 16 6 6.0189 -3.9925 0.2383 17 1 -0.4850 0.8401 0.0004 18 1 3.8751 -0.6805 0.8889 19 1 3.8745 -0.6801 -0.8910 20 1 3.6584 -3.1503 0.8892 21 1 3.6578 -3.1506 -0.8908 22 1 6.4401 -1.2528 1.3508 23 1 5.3214 -2.4460 2.1390 24 1 7.9799 -3.0388 0.6381 25 1 6.4643 -4.1706 3.0545 26 1 7.6331 -5.1773 2.1662 27 1 8.6641 -3.9962 3.9687 28 1 5.3215 -4.6438 0.7650 29 1 6.4401 -4.4579 -0.6529 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084988672.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:58 Heat of formation + Delta-G solvation = -50.316520 kcal Electronic energy + Delta-G solvation = -11231.493259 eV Core-core repulsion = 9154.355021 eV Total energy + Delta-G solvation = -2077.138238 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.20928 -37.48793 -35.54467 -33.44297 -30.37457 -27.12433 -26.86971 -24.10657 -21.81037 -20.70671 -19.03077 -18.21753 -16.86944 -16.52968 -16.21071 -16.10377 -14.95699 -14.87748 -14.44992 -13.98401 -13.54144 -13.30505 -13.07039 -12.46957 -12.09749 -11.89745 -11.78472 -11.57288 -11.38786 -11.33651 -10.82078 -10.78896 -9.83366 -8.33933 -6.38495 1.33843 1.34415 1.47600 2.33028 3.01321 3.06475 3.16819 3.57462 4.08350 4.20090 4.34173 4.34707 4.43557 4.50432 4.59643 4.67787 4.75499 4.85135 4.89833 5.22673 5.24779 5.33971 5.53289 5.58861 6.12078 6.23861 6.68398 6.94768 7.26722 8.82601 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.064655 B = 0.008412 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.964761 B = 3327.869828 C = 3514.660278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.253 1.253 7 C -0.535 4.535 8 H 0.035 0.965 9 C 0.000 4.000 10 C 0.048 3.952 11 N -0.495 5.495 12 C 0.000 4.000 13 C -0.103 4.103 14 C 0.090 3.910 15 O -0.592 6.592 16 C 0.009 3.991 17 H 0.268 0.732 18 H 0.015 0.985 19 H 0.016 0.984 20 H 0.034 0.966 21 H 0.063 0.937 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.104 0.896 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.398 0.602 28 H 0.077 0.923 29 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.816 -7.792 5.162 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.188 4.188 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.177 1.177 7 C -0.574 4.574 8 H 0.054 0.946 9 C -0.038 4.038 10 C -0.081 4.081 11 N -0.217 5.217 12 C -0.129 4.129 13 C -0.122 4.122 14 C 0.012 3.988 15 O -0.401 6.401 16 C -0.120 4.120 17 H 0.077 0.923 18 H 0.033 0.967 19 H 0.034 0.966 20 H 0.052 0.948 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.122 0.878 25 H 0.069 0.931 26 H 0.090 0.910 27 H 0.248 0.752 28 H 0.096 0.904 29 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.779 -6.898 4.042 17.689 hybrid contribution -0.786 -0.004 1.018 1.286 sum 14.993 -6.902 5.060 17.263 Atomic orbital electron populations 1.70050 1.08136 1.28284 1.52330 1.25948 0.95608 1.03356 0.93915 0.85648 0.79260 0.78417 0.79253 1.19175 1.20457 1.17732 1.21399 0.91697 0.93370 1.50886 0.94635 1.19366 0.93735 0.94351 0.96351 1.22374 0.87797 0.97909 0.99994 1.68922 1.09400 1.14780 1.28646 1.23892 0.96871 1.00548 0.91622 1.22659 0.97341 0.96012 0.96222 1.22135 0.89461 0.95754 0.91498 1.86450 1.54357 1.58091 1.41197 1.23836 0.96237 0.92038 0.99850 0.92311 0.96718 0.96601 0.94788 0.91827 0.91059 0.91569 0.87760 0.93148 0.90966 0.75244 0.90434 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.31 13.96 21.45 0.30 -60.01 15 2 C 0.01 0.54 5.47 84.66 0.46 1.01 15 3 Si 0.95 46.01 27.47 68.60 1.88 47.89 15 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 15 5 H -0.28 -13.01 7.11 99.48 0.71 -12.31 15 6 H -0.25 -11.69 6.54 99.48 0.65 -11.04 15 7 C -0.54 -31.88 9.66 25.60 0.25 -31.63 15 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 15 9 C 0.00 -0.01 4.15 29.85 0.12 0.11 15 10 C 0.05 1.98 4.76 86.30 0.41 2.39 15 11 N -0.50 -17.33 6.41 -927.84 -5.95 -23.28 15 12 C 0.00 -0.01 6.57 83.57 0.55 0.54 15 13 C -0.10 -2.51 4.34 -10.45 -0.05 -2.56 15 14 C 0.09 1.68 6.96 71.98 0.50 2.18 15 15 O -0.59 -11.60 13.66 -148.98 -2.04 -13.63 15 16 C 0.01 0.23 7.29 83.57 0.61 0.84 15 17 H 0.27 15.84 8.31 -92.71 -0.77 15.06 15 18 H 0.01 0.72 6.72 -2.39 -0.02 0.71 15 19 H 0.02 0.79 7.57 -2.39 -0.02 0.77 15 20 H 0.03 1.39 7.56 -2.39 -0.02 1.37 15 21 H 0.06 2.68 8.14 -2.39 -0.02 2.66 15 22 H 0.07 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.07 2.11 7.43 -2.39 -0.02 2.09 15 24 H 0.10 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.05 0.92 7.81 -2.38 -0.02 0.91 15 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 15 27 H 0.40 3.75 9.12 -74.05 -0.68 3.07 15 28 H 0.08 1.85 7.73 -2.39 -0.02 1.83 15 29 H 0.10 2.23 8.14 -2.38 -0.02 2.21 15 Total: -1.00 -69.86 242.41 -2.55 -72.41 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.39 Total: 3.75 kcal Atomic # 6 Polarization: -29.99 SS G_CDS: 2.86 Total: -27.13 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -5.65 Total: -83.29 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -2.04 Total: -13.63 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.89 kcal Total: -69.86 -2.55 -72.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084988672.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.095 kcal (2) G-P(sol) polarization free energy of solvation -69.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds