Wall clock time and date at job start Mon Mar 30 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86802 * 120.00189 * 2 1 4 4 H 1.48502 * 109.47056 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.46968 * 29.99992 * 3 2 1 6 6 H 1.48494 * 109.47202 * 150.00014 * 3 2 1 7 7 C 1.38633 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99728 * 359.97438 * 7 2 1 9 9 O 1.34919 * 120.00233 * 180.02562 * 7 2 1 10 10 C 1.42900 * 117.00193 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47002 * 29.99982 * 10 9 7 12 12 C 1.52999 * 109.47616 * 270.00250 * 10 9 7 13 13 C 1.52997 * 109.47317 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47060 * 59.99960 * 13 12 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 12 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 N 1.46899 * 109.47394 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 19 19 H 0.97004 * 119.99809 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46929 * 59.99102 * 12 10 9 21 21 H 1.09002 * 109.46716 * 299.99907 * 12 10 9 22 22 H 1.09002 * 109.47153 * 299.99641 * 13 12 10 23 23 H 1.09001 * 109.46832 * 179.97438 * 13 12 10 24 24 H 1.08992 * 109.47399 * 59.99823 * 14 13 12 25 25 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 26 26 H 1.00899 * 110.99492 * 60.00133 * 17 15 14 27 27 H 1.00895 * 110.99738 * 183.95562 * 17 15 14 28 28 H 1.09002 * 109.47153 * 60.00231 * 18 15 14 29 29 H 1.09001 * 109.47289 * 180.02562 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5474 1.4401 0.7000 7 6 2.0090 -1.2006 0.0005 8 1 1.4689 -2.1360 0.0014 9 8 3.3582 -1.2007 0.0011 10 6 4.0069 -2.4739 0.0022 11 1 3.3791 -3.2020 -0.5114 12 6 4.2379 -2.9275 1.4450 13 6 4.9319 -4.2910 1.4461 14 6 6.2768 -4.1793 0.7251 15 6 6.0458 -3.7259 -0.7178 16 1 5.4175 -4.4537 -1.2312 17 7 7.3370 -3.6192 -1.4102 18 6 5.3518 -2.3624 -0.7189 19 1 -0.4850 0.8401 -0.0004 20 1 3.2798 -3.0073 1.9585 21 1 4.8658 -2.1994 1.9586 22 1 4.3037 -5.0189 0.9326 23 1 5.0968 -4.6139 2.4741 24 1 6.9050 -3.4515 1.2385 25 1 6.7710 -5.1509 0.7256 26 1 7.8149 -4.5078 -1.4229 27 1 7.2172 -3.2597 -2.3453 28 1 5.9801 -1.6345 -0.2054 29 1 5.1868 -2.0394 -1.7468 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086407775.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:28 Heat of formation + Delta-G solvation = -56.260880 kcal Electronic energy + Delta-G solvation = -11644.815070 eV Core-core repulsion = 9567.419066 eV Total energy + Delta-G solvation = -2077.396005 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.61573 -35.89563 -32.96188 -31.77446 -29.46367 -27.61803 -24.32188 -21.95933 -21.02118 -19.42330 -17.49679 -15.88027 -15.36634 -14.73617 -14.73129 -13.95654 -13.60647 -13.16817 -12.59986 -12.10025 -11.91820 -11.73610 -11.27728 -10.96578 -10.70288 -10.45015 -10.41281 -10.05242 -9.74336 -9.38142 -9.15368 -8.63305 -8.11983 -5.95442 -3.61873 3.45390 3.48184 3.66160 4.46824 4.60908 4.89188 5.04860 5.33159 5.38994 5.53040 5.57772 5.78087 5.83540 5.90212 5.99285 6.05691 6.25281 6.39101 6.51301 6.55846 6.66813 6.91765 6.94731 7.23192 7.48525 7.96439 8.41486 9.45189 10.02078 11.17571 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.058370 B = 0.011011 C = 0.010109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.583493 B = 2542.415820 C = 2769.176292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.041 3.959 3 Si 0.906 3.094 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.264 1.264 7 C -0.353 4.353 8 H 0.078 0.922 9 O -0.325 6.325 10 C 0.113 3.887 11 H 0.044 0.956 12 C -0.140 4.140 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.094 3.906 16 H 0.033 0.967 17 N -0.848 5.848 18 C -0.110 4.110 19 H 0.268 0.732 20 H 0.067 0.933 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.053 0.947 26 H 0.336 0.664 27 H 0.341 0.659 28 H 0.072 0.928 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.779 -7.756 -0.356 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.155 4.155 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.189 1.189 7 C -0.431 4.431 8 H 0.095 0.905 9 O -0.241 6.241 10 C 0.053 3.947 11 H 0.062 0.938 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.017 4.017 16 H 0.051 0.949 17 N -0.378 5.378 18 C -0.148 4.148 19 H 0.078 0.922 20 H 0.085 0.915 21 H 0.081 0.919 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.153 0.847 28 H 0.091 0.909 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.960 -6.957 0.222 13.838 hybrid contribution -0.279 -0.149 -0.691 0.760 sum 11.681 -7.105 -0.468 13.680 Atomic orbital electron populations 1.69695 1.05335 1.27094 1.54062 1.24313 0.94849 0.98198 0.98157 0.86167 0.80022 0.82321 0.78124 1.20841 1.21828 1.18893 1.20449 0.78592 0.94966 1.49108 0.90453 1.85257 1.20319 1.25150 1.93373 1.21561 0.92037 0.87609 0.93474 0.93825 1.22090 1.00807 0.95636 0.99309 1.21486 0.95940 0.98084 0.99845 1.21547 0.97615 1.00582 0.95000 1.21287 0.89098 0.96725 0.94560 0.94885 1.58710 1.22617 1.33005 1.23431 1.21585 0.96124 0.96006 1.01072 0.92219 0.91468 0.91898 0.92367 0.92107 0.91200 0.92790 0.85193 0.84698 0.90949 0.91993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.81 13.97 55.48 0.77 -28.04 15 2 C 0.04 1.25 5.49 -17.51 -0.10 1.16 15 3 Si 0.91 23.72 28.62 -169.99 -4.86 18.85 15 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 15 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 15 6 H -0.26 -6.92 7.11 56.52 0.40 -6.52 15 7 C -0.35 -10.53 10.23 30.88 0.32 -10.21 15 8 H 0.08 2.40 7.88 -52.48 -0.41 1.99 15 9 O -0.33 -8.72 8.26 -16.48 -0.14 -8.85 15 10 C 0.11 2.39 2.65 -26.73 -0.07 2.31 15 11 H 0.04 0.94 7.80 -51.93 -0.41 0.54 15 12 C -0.14 -2.62 5.54 -26.73 -0.15 -2.76 15 13 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 15 14 C -0.11 -1.46 5.50 -26.73 -0.15 -1.61 15 15 C 0.09 1.34 3.24 -67.71 -0.22 1.12 15 16 H 0.03 0.47 8.14 -51.93 -0.42 0.04 15 17 N -0.85 -10.20 9.25 -4.67 -0.04 -10.24 15 18 C -0.11 -1.96 5.12 -26.73 -0.14 -2.09 15 19 H 0.27 7.89 8.31 -40.82 -0.34 7.55 15 20 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 21 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 15 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 15 26 H 0.34 3.28 9.04 -39.29 -0.36 2.92 15 27 H 0.34 3.75 8.99 -39.29 -0.35 3.39 15 28 H 0.07 1.35 8.14 -51.93 -0.42 0.92 15 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 LS Contribution 240.40 15.07 3.62 3.62 Total: -1.00 -31.97 240.40 -5.77 -37.74 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -4.47 Total: 0.83 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.66 Total: -13.92 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.73 Total: -38.28 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.14 Total: -8.85 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.86 Total: 18.85 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.97 -5.77 -37.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086407775.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.519 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds