Wall clock time and date at job start Mon Mar 30 2020 02:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86799 * 120.00059 * 2 1 4 4 H 1.48501 * 109.47009 * 239.99573 * 3 2 1 5 5 H 1.48500 * 109.46977 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47014 * 119.99727 * 3 2 1 7 7 C 1.38631 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99885 * 180.02562 * 7 2 1 9 9 O 1.34927 * 120.00788 * 0.02562 * 7 2 1 10 10 C 1.42896 * 117.00588 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.46989 * 29.99305 * 10 9 7 12 12 C 1.53006 * 109.46800 * 270.00237 * 10 9 7 13 13 C 1.52999 * 109.46885 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47592 * 59.99462 * 13 12 10 15 15 C 1.52997 * 109.47232 * 300.00195 * 14 13 12 16 16 H 1.09001 * 109.47502 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47110 * 299.99796 * 15 14 13 18 18 C 1.52997 * 109.47412 * 149.99861 * 10 9 7 19 19 H 0.97001 * 120.00484 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.46589 * 299.99313 * 12 10 9 21 21 H 1.08988 * 109.47757 * 59.99680 * 12 10 9 22 22 H 1.09000 * 109.47160 * 179.97438 * 13 12 10 23 23 H 1.09002 * 109.46719 * 299.99516 * 13 12 10 24 24 H 1.09001 * 109.47375 * 180.02562 * 14 13 12 25 25 H 1.09002 * 109.47045 * 60.00253 * 14 13 12 26 26 H 1.00896 * 111.00309 * 299.99732 * 17 15 14 27 27 H 1.00902 * 110.99923 * 63.95895 * 17 15 14 28 28 H 1.09002 * 109.47045 * 60.00039 * 18 10 9 29 29 H 1.09000 * 109.47140 * 300.00132 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1037 1.6963 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0089 -1.2006 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3343 -2.3692 0.0005 10 6 2.1125 -3.5676 0.0005 11 1 3.0569 -3.3876 0.5143 12 6 2.3903 -3.9953 -1.4420 13 6 3.2230 -5.2788 -1.4421 14 6 2.4526 -6.3867 -0.7210 15 6 2.1749 -5.9590 0.7215 16 1 1.6264 -6.7484 1.2354 17 7 3.4476 -5.7170 1.4142 18 6 1.3426 -4.6757 0.7218 19 1 -0.4851 0.8400 -0.0004 20 1 1.4459 -4.1753 -1.9558 21 1 2.9387 -3.2060 -1.9559 22 1 3.4205 -5.5838 -2.4697 23 1 4.1673 -5.0992 -0.9281 24 1 3.0460 -7.3010 -0.7206 25 1 1.5083 -6.5663 -1.2349 26 1 4.0161 -6.5504 1.4277 27 1 3.9460 -4.9459 0.9958 28 1 0.3983 -4.8557 0.2080 29 1 1.1448 -4.3710 1.7495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086407776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:29 Heat of formation + Delta-G solvation = -77.759476 kcal Electronic energy + Delta-G solvation = -11764.158222 eV Core-core repulsion = 9685.829968 eV Total energy + Delta-G solvation = -2078.328254 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 185.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30626 -37.56664 -34.02179 -33.18960 -30.83271 -29.19914 -26.66580 -23.33023 -22.97867 -20.20325 -19.47242 -17.89008 -16.56539 -16.11517 -15.87308 -15.56927 -15.20760 -14.79626 -14.23972 -13.73843 -13.25454 -13.02331 -12.88941 -12.75411 -12.30633 -12.18631 -12.12322 -11.77033 -11.16930 -11.10638 -10.92480 -10.08447 -9.54229 -8.15823 -5.84202 1.38386 1.46529 1.53372 2.33788 3.16671 3.59077 3.67500 3.83922 3.94419 4.18499 4.32015 4.37939 4.48644 4.62890 4.65686 4.78202 5.00362 5.10727 5.13675 5.22323 5.24898 5.29146 5.45835 5.50796 6.23060 6.26880 6.68027 7.27337 8.11377 9.09360 Molecular weight = 185.12amu Principal moments of inertia in cm(-1) A = 0.066939 B = 0.010267 C = 0.010136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.191203 B = 2726.488602 C = 2761.763467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.047 4.047 3 Si 1.003 2.997 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.369 4.369 8 H 0.069 0.931 9 O -0.333 6.333 10 C 0.090 3.910 11 H 0.038 0.962 12 C -0.135 4.135 13 C -0.109 4.109 14 C -0.147 4.147 15 C 0.104 3.896 16 H 0.096 0.904 17 N -0.852 5.852 18 C -0.104 4.104 19 H 0.259 0.741 20 H 0.049 0.951 21 H 0.043 0.957 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.351 0.649 27 H 0.339 0.661 28 H 0.059 0.941 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.927 -11.341 -1.472 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.239 4.239 3 Si 0.825 3.175 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.448 4.448 8 H 0.087 0.913 9 O -0.249 6.249 10 C 0.031 3.969 11 H 0.056 0.944 12 C -0.173 4.173 13 C -0.147 4.147 14 C -0.186 4.186 15 C -0.007 4.007 16 H 0.114 0.886 17 N -0.384 5.384 18 C -0.142 4.142 19 H 0.068 0.932 20 H 0.068 0.932 21 H 0.062 0.938 22 H 0.097 0.903 23 H 0.083 0.917 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.166 0.834 27 H 0.153 0.847 28 H 0.077 0.923 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.160 -11.107 -0.820 13.240 hybrid contribution 0.598 0.802 -0.958 1.386 sum 7.758 -10.305 -1.778 13.020 Atomic orbital electron populations 1.70193 1.07595 1.27140 1.53901 1.26217 0.96745 1.02023 0.98902 0.84854 0.77251 0.76094 0.79256 1.18864 1.20442 1.18902 1.21303 0.90571 0.83708 1.49243 0.91298 1.85599 1.34347 1.11918 1.93052 1.22033 0.93795 0.86266 0.94760 0.94435 1.22017 0.99912 0.97955 0.97405 1.21476 0.98088 0.93567 1.01528 1.22322 1.01439 0.98403 0.96462 1.21308 0.91213 0.95336 0.92876 0.88641 1.58932 1.07562 1.11490 1.60429 1.21549 0.98721 0.94463 0.99509 0.93192 0.93247 0.93848 0.90328 0.91667 0.89237 0.91383 0.83431 0.84667 0.92253 0.93441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.95 13.67 21.61 0.30 -61.66 15 2 C -0.05 -2.82 5.49 84.82 0.47 -2.36 15 3 Si 1.00 46.31 29.55 68.60 2.03 48.34 15 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 15 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.37 -22.48 9.77 67.91 0.66 -21.82 15 8 H 0.07 3.91 7.64 -2.91 -0.02 3.89 15 9 O -0.33 -20.07 9.43 -81.96 -0.77 -20.84 15 10 C 0.09 4.03 2.39 30.60 0.07 4.11 15 11 H 0.04 1.68 6.23 -2.39 -0.01 1.66 15 12 C -0.13 -5.16 5.54 30.60 0.17 -4.99 15 13 C -0.11 -2.89 5.66 30.59 0.17 -2.72 15 14 C -0.15 -3.39 5.61 30.59 0.17 -3.22 15 15 C 0.10 2.84 3.69 44.90 0.17 3.01 15 16 H 0.10 2.30 8.14 -2.39 -0.02 2.28 15 17 N -0.85 -22.02 9.12 -168.74 -1.54 -23.56 15 18 C -0.10 -4.01 5.28 30.58 0.16 -3.85 15 19 H 0.26 15.88 8.31 -92.71 -0.77 15.11 15 20 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.04 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.06 1.60 6.76 -2.39 -0.02 1.59 15 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 15 26 H 0.35 6.75 9.04 -89.70 -0.81 5.94 15 27 H 0.34 9.43 5.45 -89.69 -0.49 8.94 15 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 15 29 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 Total: -1.00 -72.53 235.10 1.90 -70.63 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -0.16 Total: 18.93 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 2.04 Total: -31.84 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.24 Total: -85.22 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.77 Total: -20.84 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.53 1.90 -70.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086407776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.131 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds