Wall clock time and date at job start Mon Mar 30 2020 01:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.84029 * 2 1 4 4 S 1.82566 * 110.78388 * 123.40407 * 2 1 3 5 5 C 1.77376 * 93.94967 * 118.28001 * 4 2 1 6 6 C 1.41095 * 126.21505 * 180.02562 * 5 4 2 7 7 H 1.08009 * 119.99954 * 0.02562 * 6 5 4 8 8 C 1.40477 * 119.99955 * 180.02562 * 6 5 4 9 9 N 1.30482 * 119.99991 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47123 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46740 * 119.99852 * 10 8 6 13 13 H 1.48491 * 109.46952 * 239.99818 * 10 8 6 14 14 N 1.31907 * 107.56468 * 359.74787 * 5 4 2 15 15 C 1.30650 * 122.07514 * 0.51662 * 14 5 4 16 16 O 1.21543 * 123.10418 * 179.72149 * 15 14 5 17 17 H 1.08996 * 109.47067 * 183.40190 * 1 2 3 18 18 H 1.09003 * 109.46925 * 303.40062 * 1 2 3 19 19 H 1.09000 * 109.47503 * 63.40071 * 1 2 3 20 20 H 0.97000 * 119.99971 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 16 2.1778 -0.9397 1.4249 5 6 3.0050 -2.1397 0.4140 6 6 3.7615 -3.2381 0.8743 7 1 3.8774 -3.4077 1.9346 8 6 4.3641 -4.1112 -0.0466 9 7 4.2237 -3.9067 -1.3276 10 14 5.3652 -5.5659 0.5628 11 1 5.3697 -5.5764 2.0477 12 1 4.7620 -6.8267 0.0612 13 1 6.7591 -5.4513 0.0638 14 7 2.7792 -1.8221 -0.8462 15 6 2.0673 -0.7794 -1.1821 16 8 1.8517 -0.4667 -2.3367 17 1 -0.3633 -1.0258 0.0610 18 1 -0.3633 0.5657 0.8580 19 1 -0.3634 0.4601 -0.9189 20 1 4.6401 -4.5093 -1.9635 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100206918.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:27 Heat of formation + Delta-G solvation = -54.260742 kcal Electronic energy + Delta-G solvation = -9123.532825 eV Core-core repulsion = 7217.310235 eV Total energy + Delta-G solvation = -1906.222590 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 185.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.19224 -37.08684 -35.26015 -33.24002 -30.05423 -25.34993 -24.27220 -21.00843 -18.85373 -18.48312 -17.17586 -16.54617 -15.87506 -15.44231 -14.74396 -13.93147 -13.53730 -13.36263 -13.29820 -13.13921 -12.82200 -12.22937 -12.07257 -11.88605 -11.07470 -10.60138 -9.43915 -8.99096 -8.76171 -7.60512 0.29759 0.79863 1.30060 1.43596 1.52765 1.65891 2.10131 2.41980 3.16776 3.44757 4.01852 4.04671 4.38115 4.67935 4.69578 4.71569 5.03323 5.65996 5.76392 6.07806 7.29687 7.85075 8.05201 Molecular weight = 185.03amu Principal moments of inertia in cm(-1) A = 0.066203 B = 0.014103 C = 0.012033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.839966 B = 1984.938443 C = 2326.303625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.124 4.124 3 H 0.123 0.877 4 S -0.291 6.291 5 C 0.269 3.731 6 C -0.314 4.314 7 H 0.141 0.859 8 C 0.008 3.992 9 N -0.704 5.704 10 Si 1.024 2.976 11 H -0.231 1.231 12 H -0.259 1.259 13 H -0.259 1.259 14 N -0.678 5.678 15 C 0.483 3.517 16 O -0.603 6.603 17 H 0.049 0.951 18 H 0.091 0.909 19 H 0.072 0.928 20 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -3.053 7.226 7.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.260 4.260 3 H 0.141 0.859 4 S -0.057 6.057 5 C 0.029 3.971 6 C -0.351 4.351 7 H 0.158 0.842 8 C -0.223 4.223 9 N -0.323 5.323 10 Si 0.838 3.162 11 H -0.153 1.153 12 H -0.183 1.183 13 H -0.183 1.183 14 N -0.430 5.430 15 C 0.263 3.737 16 O -0.492 6.492 17 H 0.068 0.932 18 H 0.110 0.890 19 H 0.091 0.909 20 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.069 -2.993 7.054 7.737 hybrid contribution 0.061 0.162 -0.886 0.903 sum 1.130 -2.831 6.168 6.880 Atomic orbital electron populations 1.21464 0.88689 1.02516 1.03467 1.25205 1.02840 1.02949 0.95005 0.85923 1.86059 1.65545 1.35565 1.18555 1.24753 0.92312 0.93943 0.86067 1.20801 1.15874 1.00510 0.97904 0.84157 1.27850 0.97469 1.02951 0.94043 1.70039 1.25284 1.32304 1.04673 0.84550 0.76798 0.73699 0.81134 1.15335 1.18304 1.18320 1.66079 1.33935 1.24712 1.18232 1.21248 0.79896 0.82563 0.89992 1.90484 1.63666 1.72695 1.22312 0.93189 0.89028 0.90948 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.84 9.37 71.98 0.67 -3.16 14 2 C -0.12 -5.62 3.97 30.08 0.12 -5.50 14 3 H 0.12 5.16 8.14 -2.38 -0.02 5.14 14 4 S -0.29 -13.14 22.86 -56.49 -1.29 -14.43 14 5 C 0.27 14.11 7.26 85.38 0.62 14.73 14 6 C -0.31 -14.43 9.49 23.52 0.22 -14.20 14 7 H 0.14 5.44 7.85 -2.91 -0.02 5.41 14 8 C 0.01 0.34 5.50 85.44 0.47 0.81 14 9 N -0.70 -34.91 11.94 21.91 0.26 -34.65 14 10 Si 1.02 29.74 29.56 68.60 2.03 31.76 14 11 H -0.23 -5.98 7.11 99.48 0.71 -5.27 14 12 H -0.26 -7.32 7.11 99.48 0.71 -6.61 14 13 H -0.26 -7.33 7.11 99.48 0.71 -6.62 14 14 N -0.68 -40.25 8.46 -309.45 -2.62 -42.86 14 15 C 0.48 27.80 7.56 88.52 0.67 28.47 14 16 O -0.60 -38.12 18.04 -3.85 -0.07 -38.19 14 17 H 0.05 1.95 8.14 -2.39 -0.02 1.93 14 18 H 0.09 2.76 8.14 -2.39 -0.02 2.74 14 19 H 0.07 2.63 8.14 -2.39 -0.02 2.61 14 20 H 0.31 13.22 8.29 -92.71 -0.77 12.45 14 Total: -1.00 -67.78 204.05 2.34 -65.44 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.25 Total: 11.78 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: 2.78 Total: 21.14 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.36 Total: -77.51 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.07 Total: -38.19 kcal Atomic # 14 Polarization: 29.74 SS G_CDS: 2.03 Total: 31.76 kcal Atomic # 16 Polarization: -13.14 SS G_CDS: -1.29 Total: -14.43 kcal Total: -67.78 2.34 -65.44 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100206918.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.179 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds