Wall clock time and date at job start Mon Mar 30 2020 01:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86803 * 120.00362 * 2 1 4 4 H 1.48501 * 109.47172 * 240.00741 * 3 2 1 5 5 H 1.48504 * 109.46581 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47009 * 120.00188 * 3 2 1 7 7 C 1.38814 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99922 * 193.21258 * 7 2 1 9 9 N 1.36934 * 120.00186 * 13.21948 * 7 2 1 10 10 C 1.44060 * 119.74221 * 205.01460 * 9 7 2 11 11 C 1.52960 * 110.05764 * 267.53897 * 10 9 7 12 12 C 1.48430 * 112.49572 * 282.31280 * 11 10 9 13 13 O 1.46416 * 110.60225 * 60.30801 * 12 11 10 14 14 C 1.31788 * 117.67609 * 284.80682 * 13 12 11 15 15 O 1.20822 * 119.40045 * 268.63504 * 14 13 12 16 16 C 1.48349 * 119.63637 * 24.74746 * 9 7 2 17 17 H 0.97000 * 120.00276 * 359.97438 * 1 2 3 18 18 H 1.09004 * 109.34947 * 147.39508 * 10 9 7 19 19 H 1.08995 * 109.35501 * 27.68647 * 10 9 7 20 20 H 1.08999 * 108.87286 * 43.09028 * 11 10 9 21 21 H 1.08993 * 108.87352 * 161.63295 * 11 10 9 22 22 H 1.09002 * 109.24757 * 180.59671 * 12 11 10 23 23 H 1.09002 * 109.25127 * 300.05573 * 12 11 10 24 24 H 1.09003 * 109.55531 * 21.33042 * 16 9 7 25 25 H 1.08998 * 109.66900 * 260.93548 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0101 -1.2022 -0.0005 8 1 3.0687 -1.2147 0.2132 9 7 1.3527 -2.3722 -0.2722 10 6 1.8734 -3.6179 0.2302 11 6 2.7926 -4.2600 -0.8103 12 6 2.0377 -4.9237 -1.9025 13 8 1.1973 -3.9557 -2.6100 14 6 0.0968 -3.5473 -2.0108 15 8 -0.9388 -4.1384 -2.2054 16 6 0.1067 -2.3438 -1.0769 17 1 -0.4850 0.8400 0.0004 18 1 1.0463 -4.2937 0.4476 19 1 2.4372 -3.4314 1.1441 20 1 3.4308 -3.4885 -1.2409 21 1 3.4205 -5.0015 -0.3164 22 1 2.7409 -5.3705 -2.6054 23 1 1.4065 -5.7054 -1.4797 24 1 0.0724 -1.4261 -1.6641 25 1 -0.7584 -2.3882 -0.4153 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108282624.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:12 Heat of formation + Delta-G solvation = -54.856450 kcal Electronic energy + Delta-G solvation = -11800.512933 eV Core-core repulsion = 9587.344735 eV Total energy + Delta-G solvation = -2213.168198 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 185.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.80912 -36.56716 -35.45187 -32.59748 -30.69553 -27.11806 -25.84066 -23.31842 -20.32619 -19.80201 -17.34359 -16.59982 -15.74443 -15.54708 -14.39186 -13.68301 -13.52214 -13.29712 -13.02409 -12.66884 -11.64178 -11.34466 -10.90259 -10.85858 -10.71040 -10.51799 -10.19084 -10.05973 -9.82636 -9.18148 -8.63839 -6.97402 -5.95338 -3.39964 2.33675 3.32690 3.38913 3.39721 4.18060 4.38132 5.10792 5.21385 5.36015 5.50180 5.57842 5.70924 6.03365 6.18785 6.26107 6.57881 6.76340 6.93765 7.23883 7.65136 7.81266 8.16926 8.41241 8.99576 9.65017 10.11609 11.14313 Molecular weight = 185.08amu Principal moments of inertia in cm(-1) A = 0.053231 B = 0.014908 C = 0.012980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.882689 B = 1877.678205 C = 2156.634062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.005 3.995 3 Si 0.912 3.088 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.585 5.585 10 C 0.147 3.853 11 C -0.191 4.191 12 C 0.108 3.892 13 O -0.406 6.406 14 C 0.470 3.530 15 O -0.505 6.505 16 C 0.150 3.850 17 H 0.260 0.740 18 H 0.031 0.969 19 H 0.063 0.937 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.051 0.949 24 H 0.113 0.887 25 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.680 -5.798 -0.858 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.194 4.194 3 Si 0.741 3.259 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.390 4.390 8 H 0.091 0.909 9 N -0.307 5.307 10 C 0.019 3.981 11 C -0.231 4.231 12 C 0.035 3.965 13 O -0.330 6.330 14 C 0.312 3.688 15 O -0.388 6.388 16 C 0.024 3.976 17 H 0.070 0.930 18 H 0.049 0.951 19 H 0.082 0.918 20 H 0.099 0.901 21 H 0.090 0.910 22 H 0.112 0.888 23 H 0.070 0.930 24 H 0.131 0.869 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.092 -5.888 -1.094 7.253 hybrid contribution 0.466 0.841 0.023 0.962 sum 4.558 -5.047 -1.071 6.884 Atomic orbital electron populations 1.69938 1.05338 1.26325 1.53570 1.25099 0.95467 0.98745 1.00107 0.86226 0.78809 0.82654 0.78225 1.20794 1.21443 1.20713 1.19179 0.92044 0.84085 1.43727 0.90900 1.43602 1.27218 1.02727 1.57187 1.20387 0.95181 0.87854 0.94652 1.22226 1.01044 1.01330 0.98519 1.22183 0.91748 0.87969 0.94555 1.85516 1.36825 1.62430 1.48181 1.25395 0.81588 0.86380 0.75440 1.90466 1.34263 1.58455 1.55596 1.21997 0.90564 0.93829 0.91214 0.92993 0.95062 0.91849 0.90142 0.91007 0.88817 0.93044 0.86889 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.35 10.87 55.49 0.60 -24.75 15 2 C 0.00 0.12 5.01 -17.43 -0.09 0.04 15 3 Si 0.91 20.98 29.57 -169.99 -5.03 15.95 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 7 C -0.26 -6.84 9.56 -15.06 -0.14 -6.98 15 8 H 0.07 1.84 7.86 -52.49 -0.41 1.43 15 9 N -0.58 -14.22 2.77 -174.05 -0.48 -14.70 15 10 C 0.15 2.93 5.55 -5.36 -0.03 2.90 15 11 C -0.19 -3.13 5.69 -28.98 -0.17 -3.30 15 12 C 0.11 1.76 6.56 34.93 0.23 1.98 15 13 O -0.41 -8.67 10.17 -33.59 -0.34 -9.01 15 14 C 0.47 10.85 6.49 36.82 0.24 11.09 15 15 O -0.51 -12.42 17.91 -18.91 -0.34 -12.76 15 16 C 0.15 3.70 5.12 -3.36 -0.02 3.68 15 17 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 18 H 0.03 0.60 7.87 -51.93 -0.41 0.20 15 19 H 0.06 1.21 7.98 -51.93 -0.41 0.80 15 20 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 21 H 0.07 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.09 1.23 8.14 -51.93 -0.42 0.80 15 23 H 0.05 0.79 8.10 -51.93 -0.42 0.37 15 24 H 0.11 3.01 6.55 -51.93 -0.34 2.67 15 25 H 0.08 2.05 8.02 -51.93 -0.42 1.64 15 LS Contribution 215.71 15.07 3.25 3.25 Total: -1.00 -29.67 215.71 -5.13 -34.80 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -2.82 Total: -2.19 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 0.02 Total: 9.41 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.12 Total: -39.45 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.68 Total: -21.77 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -29.67 -5.13 -34.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108282624.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.055 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds