Wall clock time and date at job start Mon Mar 30 2020 01:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36932 * 119.99832 * 2 1 4 4 H 1.08006 * 119.99444 * 162.33129 * 3 2 1 5 5 C 1.38813 * 120.00349 * 342.05041 * 3 2 1 6 6 N 1.31613 * 119.99806 * 344.17149 * 5 3 2 7 7 Si 1.86806 * 119.99930 * 164.16980 * 5 3 2 8 8 H 1.48503 * 109.47020 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.46997 * 120.00232 * 7 5 3 10 10 H 1.48503 * 109.46849 * 240.00503 * 7 5 3 11 11 C 1.46497 * 119.99627 * 180.02562 * 2 1 3 12 12 H 1.09006 * 109.47164 * 179.97438 * 11 2 1 13 13 C 1.53001 * 109.47115 * 299.99740 * 11 2 1 14 14 N 1.46899 * 109.47178 * 305.00254 * 13 11 2 15 15 C 1.53007 * 109.47218 * 59.99906 * 11 2 1 16 16 C 1.52994 * 117.49750 * 248.74388 * 15 11 2 17 17 C 1.53001 * 117.49498 * 180.08364 * 15 11 2 18 18 H 1.09000 * 109.47281 * 84.86003 * 1 2 3 19 19 H 1.08990 * 109.47159 * 204.86416 * 1 2 3 20 20 H 1.08995 * 109.46790 * 324.86475 * 1 2 3 21 21 H 0.97001 * 119.99887 * 179.97438 * 6 5 3 22 22 H 1.08999 * 109.47112 * 65.00533 * 13 11 2 23 23 H 1.09006 * 109.46871 * 185.00126 * 13 11 2 24 24 H 1.00896 * 110.99777 * 56.04062 * 14 13 11 25 25 H 1.00893 * 111.00246 * 180.02562 * 14 13 11 26 26 H 1.08996 * 115.55005 * 34.41946 * 15 11 2 27 27 H 1.09008 * 117.49834 * 0.02562 * 16 15 11 28 28 H 1.08994 * 117.49922 * 145.02058 * 16 15 11 29 29 H 1.09003 * 117.49769 * 214.97440 * 17 15 11 30 30 H 1.08998 * 117.50102 * 359.97438 * 17 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1915 1.2079 0.2839 5 6 1.5063 2.3588 -0.3705 6 7 0.3578 2.3053 -1.0108 7 14 2.2708 4.0131 0.0400 8 1 3.5531 3.8013 0.7583 9 1 2.5241 4.7662 -1.2145 10 1 1.3425 4.7869 0.9031 11 6 2.1975 -1.2687 -0.0006 12 1 3.2692 -1.0696 -0.0009 13 6 1.8278 -2.0716 1.2484 14 7 2.0713 -1.2552 2.4451 15 6 1.8278 -2.0705 -1.2502 16 6 1.0114 -3.3494 -1.0531 17 6 2.4913 -3.4368 -1.4348 18 1 -0.3634 0.0921 -1.0235 19 1 -0.3633 -0.9323 0.4321 20 1 -0.3633 0.8404 0.5914 21 1 -0.0920 3.1249 -1.2694 22 1 0.7741 -2.3469 1.2046 23 1 2.4376 -2.9740 1.2938 24 1 1.5668 -0.3828 2.3964 25 1 1.8351 -1.7636 3.2839 26 1 1.6316 -1.4812 -2.1459 27 1 0.7373 -3.6193 -0.0332 28 1 0.2784 -3.6016 -1.8192 29 1 2.7311 -3.7465 -2.4520 30 1 3.1914 -3.7642 -0.6662 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126743456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:45 Heat of formation + Delta-G solvation = 51.854062 kcal Electronic energy + Delta-G solvation = -11810.860350 eV Core-core repulsion = 9835.871224 eV Total energy + Delta-G solvation = -1974.989127 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 184.127 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.14009 -34.84640 -33.05282 -30.61507 -27.00697 -25.87456 -23.22507 -21.87078 -21.52838 -18.20941 -16.71178 -15.73516 -15.05067 -14.85608 -14.13026 -13.36745 -12.98841 -12.82123 -11.97700 -11.69482 -11.26453 -11.02172 -10.84212 -10.67112 -10.45079 -10.29523 -10.05200 -9.86021 -9.52262 -9.23856 -8.48260 -7.95892 -6.73598 -5.65453 -3.06023 3.42943 3.50741 3.53780 4.34013 4.58752 5.19585 5.30525 5.45438 5.51870 5.55855 5.73023 5.93848 6.01482 6.09901 6.26681 6.32954 6.53259 6.63407 6.78681 6.90673 7.00274 7.42483 7.78417 7.85646 7.91178 8.18723 8.45075 9.31295 9.95545 10.42955 11.39944 Molecular weight = 184.13amu Principal moments of inertia in cm(-1) A = 0.049960 B = 0.013042 C = 0.012035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.311399 B = 2146.335313 C = 2326.015492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.590 5.590 3 C -0.242 4.242 4 H 0.072 0.928 5 C -0.005 4.005 6 N -0.912 5.912 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.204 3.796 12 H 0.072 0.928 13 C 0.050 3.950 14 N -0.845 5.845 15 C -0.145 4.145 16 C -0.192 4.192 17 C -0.190 4.190 18 H 0.026 0.974 19 H -0.005 1.005 20 H 0.043 0.957 21 H 0.249 0.751 22 H 0.021 0.979 23 H 0.055 0.945 24 H 0.356 0.644 25 H 0.322 0.678 26 H 0.104 0.896 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -8.452 2.368 8.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.312 5.312 3 C -0.372 4.372 4 H 0.090 0.910 5 C -0.202 4.202 6 N -0.558 5.558 7 Si 0.733 3.267 8 H -0.203 1.203 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.095 3.905 12 H 0.090 0.910 13 C -0.082 4.082 14 N -0.376 5.376 15 C -0.166 4.166 16 C -0.229 4.229 17 C -0.228 4.228 18 H 0.045 0.955 19 H 0.013 0.987 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.039 0.961 23 H 0.074 0.926 24 H 0.172 0.828 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.611 -8.271 2.081 8.679 hybrid contribution -0.819 0.786 0.133 1.143 sum 0.792 -7.484 2.215 7.845 Atomic orbital electron populations 1.20731 0.82808 0.94992 0.99397 1.43984 1.01647 1.00229 1.85290 1.19352 0.95711 0.84336 1.37769 0.90970 1.24909 0.97834 0.98145 0.99320 1.70126 1.17899 1.26108 1.41653 0.86202 0.78516 0.84439 0.77562 1.20299 1.22044 1.21840 1.19915 0.96380 0.85644 0.88538 0.90989 1.22315 0.97515 0.95742 0.92651 1.58600 1.67033 1.08974 1.02988 1.23291 1.02176 0.88860 1.02272 1.23025 0.93691 1.04194 1.01961 1.22906 0.95454 1.02874 1.01531 0.95530 0.98701 0.93870 0.94030 0.96072 0.92616 0.82837 0.86834 0.87829 0.88920 0.89967 0.89803 0.89357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.07 8.30 59.85 0.50 4.57 16 2 N -0.59 -14.54 1.89 -173.48 -0.33 -14.87 16 3 C -0.24 -6.65 9.64 -15.06 -0.15 -6.79 16 4 H 0.07 1.99 7.79 -52.48 -0.41 1.58 16 5 C 0.00 -0.14 5.06 -17.43 -0.09 -0.23 16 6 N -0.91 -26.74 10.58 55.49 0.59 -26.15 16 7 Si 0.90 22.17 29.58 -169.99 -5.03 17.14 16 8 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 C 0.20 4.26 2.80 -67.93 -0.19 4.07 16 12 H 0.07 1.60 7.83 -51.93 -0.41 1.20 16 13 C 0.05 0.91 4.73 -3.82 -0.02 0.89 16 14 N -0.85 -15.30 9.62 -10.37 -0.10 -15.39 16 15 C -0.15 -2.74 5.48 -90.62 -0.50 -3.24 16 16 C -0.19 -3.05 9.59 -26.69 -0.26 -3.30 16 17 C -0.19 -2.91 9.94 -26.69 -0.27 -3.17 16 18 H 0.03 0.72 7.46 -51.93 -0.39 0.33 16 19 H -0.01 -0.12 6.53 -51.93 -0.34 -0.46 16 20 H 0.04 1.14 7.07 -51.93 -0.37 0.78 16 21 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 22 H 0.02 0.38 5.33 -51.93 -0.28 0.11 16 23 H 0.06 0.91 7.44 -51.93 -0.39 0.53 16 24 H 0.36 7.22 8.12 -39.29 -0.32 6.90 16 25 H 0.32 4.82 9.08 -39.30 -0.36 4.47 16 26 H 0.10 2.22 8.14 -51.93 -0.42 1.80 16 27 H 0.09 1.42 5.80 -51.92 -0.30 1.12 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.27 7.66 -51.93 -0.40 0.87 16 LS Contribution 241.37 15.07 3.64 3.64 Total: -1.00 -28.73 241.37 -6.55 -35.28 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.35 Total: 7.57 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -0.96 Total: -7.21 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.16 Total: -56.42 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -28.73 -6.55 -35.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126743456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.131 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds